Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00484 ATGTTAGAGGAGAAACCTAAAATTACTCTCTTATGCATGAACGCTGCTGTACATAAGGTTCTGCTTTCCAAATGGGAGAATGACGAGCTGGTGCATGGTGCAAAGGTAGATATTCGTCTTCATAACTGTCCTAAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAACTGGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCACTGGTGGTGCAAATGTGTTTTGAATGCTGTAAATGTAGACAAACAATTTCACGTATATTTCCTGATGGAAAATATTCTCCACCATCAACTTGCAATTTGAATGGCTGCAAGAGCAAAATCTTTAATCCATTGCGACCTACTGCCCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACCTGAAGACCACGAAGAAGGACGAGTGCCTCGAACAGTGGAATGTGAGCTTACCCAAGATCTTGTTGATGCGTGCATACCTGGAGACGTGGTTACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAGTCAAAGAACAGAAACCAAGGATTTTACTATCTGTATCTTGAAGCTGTATCCATAAAAAATTCGAAGTCGCAGTCCATGCCTGAGGATCTGCAGGACTCTAATCCAAAAACTAGGCCAACTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGTGCAGGAACACCGTTCAGATTTATTTCGGCAAATCCTTCAATCTATATGCCCATCCATCTACGGGCATGAGCTTGTTAAAGCTGGGATAACATTGTCATTATTTGGTGGTGTACGGAAGCATTCTATGGATCAAAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTCGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCAGCAGTTTCTCCACGTGGTATCTATGTATGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCCATGACAAGTGACTATGCTTTTGAAGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTTGATAAAATGTCATCAGAGCATCAGGCTTTACTGGAGGCGATGGAGCAACAGTGTGTCTCAATTGCAAAAGCGGGATTGGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCTGCTGCAAATCCCGCTGGTGGTCATTATAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCGGCTCTCCTGTCACGTTTTGATTTAATTTTCATACTGCTGGACAAACCTGATGAACTTTTGGACAAGCGACTCTCGGACCACATTATGGCACTTCATGGTGGGAACGGACAACTTTTGCCGGCATTAAAAAGGCAACGTGGAGATACATCTGATTCCAGAGCTACTGTGTCGCAAAATGCGGAAGGTGTACTAGATCTGGGTGGTACTGGATCTTTAATTTCAAGATTGAGACTTGACCCACTAAGAGATGGTGATTTTGTTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCGAGGAGTTTTGTCTTTCCCAGGATGACAAAGCCAGCTGCAGAAATCTTGCAAAAGTTTTACCTAAAACTGAGGGATCATAATACTTCAGCTGACGGTACTCCTATAACAGCTAGGCAGCTGGAAAGTCTAGTGAGACTAGCTGAAGCTCGGGCTCGGCTGGACTTGCGAATAGAAATAACGGCCCAGGATGCAACGGATGTTGTTGAAATCATGAAAGAATCCCTGTATGATAAATATGTTGATGAGCATGGAATCGTGGATTTTGGTCGAAGTAGTGGGATGAGTCAACAGAAAGAAGCAAAACGCTTTCTAAATGCACTCAACAAGCAATCGGAATTGGAACAGAAGGATTGCTTTTCAGTATCTGAAATATACAGTCTGGCAGATAGGATTTCCTTGAAAGTACCTGATATTGACACTTTCATCGAAAATTTAAACAGTGTTGGTTATCTACTAAAAAAAGGACCAAAGACATACCAGGTATTATCCTCTTCTTATGCACGAAGCCAACCGTCGTTGAAGACAAGGGGTTAA 2142 0.4169 MLEEKPKITLLCMNAAVHKVLLSKWENDELVHGAKVDIRLHNCPKTMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVQMCFECCKCRQTISRIFPDGKYSPPSTCNLNGCKSKIFNPLRPTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLEAVSIKNSKSQSMPEDLQDSNPKTRPTELFDLFSFSSKDLEFVVKFVQEHRSDLFRQILQSICPSIYGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRLSDHIMALHGGNGQLLPALKRQRGDTSDSRATVSQNAEGVLDLGGTGSLISRLRLDPLRDGDFVPLPGQLLRKYIAYARSFVFPRMTKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRIEITAQDATDVVEIMKESLYDKYVDEHGIVDFGRSSGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRISLKVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYARSQPSLKTRG* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00484 713 SMART AAA_5 300 452 IPR003593 GO:0016887
Lapu6g00484 713 FunFam DNA helicase MCM8 isoform X1 77 128 - -
Lapu6g00484 713 Pfam MCM AAA-lid domain 528 611 IPR041562 -
Lapu6g00484 713 Coils Coil 371 391 - -
Lapu6g00484 713 Gene3D - 77 127 - -
Lapu6g00484 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 617 IPR027417 -
Lapu6g00484 713 Pfam MCM P-loop domain 252 467 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g00484 713 Pfam MCM OB domain 50 178 IPR033762 -
Lapu6g00484 713 PRINTS Mini-chromosome maintenance (MCM) protein family signature 437 445 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g00484 713 PRINTS Mini-chromosome maintenance (MCM) protein family signature 386 399 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g00484 713 PRINTS Mini-chromosome maintenance (MCM) protein family signature 410 422 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g00484 713 PRINTS Mini-chromosome maintenance (MCM) protein family signature 359 373 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g00484 713 PRINTS Mini-chromosome maintenance (MCM) protein family signature 299 314 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g00484 713 SMART mcm 46 612 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lapu6g00484 713 CDD MCM8 260 610 - -
Lapu6g00484 713 Gene3D - 234 620 IPR027417 -
Lapu6g00484 713 Gene3D - 50 179 IPR012340 -
Lapu6g00484 713 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 2 649 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lapu6g00484 713 SUPERFAMILY Nucleic acid-binding proteins 2 180 IPR012340 -
Lapu6g00484 713 CDD MCM8_WHD 633 698 - -
Lapu6g00484 713 ProSiteProfiles MCM family domain profile. 256 463 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00484 Lapu-Chr6 5036910 5049878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00484 2 698 Core DNA Replication Machinery Family AT3G09660 75.358 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00484 K10737 - gmx:100784549 1278.08