Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00483 ATGGCCGACGGTCCGTCCAGTCCAGGCGGTGGAAGCCACGAGAGCGGCGACCACAGTCCCCGCTCTAACGTGCGCGAGCAGGACAGGTACCTCCCCATCGCTAACATAAGCCGCATCATGAAGAAGGCGCTCCCTGCCAACGGGAAGATCGCCAAAGACGCAAAAGAGACTGTCCAGGAATGCGTCTCTGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGAAAGACTATTAACGGGGACGATTTGCTCTGGGCAATGGCTACCCTTGGTTTCGAGGATTATATCGATCCCTTGAAGATTTACCTCACAAGATACAGAGAGATGGAGGTAATTTTGATCTTCCGTCCAATGCTTGAATAG 384 0.5234 MADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEVILIFRPMLE* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00483 127 SUPERFAMILY Histone-fold 27 117 IPR009072 GO:0046982
Lapu6g00483 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Lapu6g00483 127 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Lapu6g00483 127 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Lapu6g00483 127 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Lapu6g00483 127 Gene3D Histone, subunit A 16 118 IPR009072 GO:0046982
Lapu6g00483 127 MobiDBLite consensus disorder prediction 1 27 - -
Lapu6g00483 127 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 117 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lapu6g00483 127 FunFam Nuclear transcription factor Y subunit B-3 19 120 - -
Lapu6g00483 127 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00483 Lapu-Chr6 5030346 5036388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00483 7 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 87.719 4.38e-69 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu6g00483 CBFD_NFYB_HMF 5.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00483 K08065 - gmx:100820170 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00483 6 5030346 5036388 Lapu6g00483 6 5030346 5036388 ECH
Lapu6g00483 6 5030346 5036388 Lapu7g00625 7 7152436 7152885 PCT