Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00481 ATGCTGGATCTCAACCTCAACGCCGATTCCCCCTCCGACAACAACCACACGCCGCTCTCCGTCACTCAAATGGAGAGCTCCGGCAGCTTCAATTCCTCCGTCGTCAATGCTGCCGACACTGACGACTCATGCTCCTACGGCGACGCGATTGCCTACAACTTTGCCATCCTCAACAACAACAATAACAACACCGCCTCCTCCTCCGCCGGAGAATCCTCCCTCCGTACCATCCAGCTCTTTCCGGCCACCGACTCCGGAGTTTCGCCGGCATGGCTGGACTTCTCGTCCAAGGTGGATCAGCACGGTGCCGCCGCAGAGCAGAGGGTCACTCCGCGGCAGCAGCCGCAGGTGAAGAAGAGCCGCCGTGGACCGAGGTCGAGGAGCTCGCAGTATCGTGGCGTCACTTTCTATCGCAGGACCGGAAGATGGGAATCGCACATTTGGGATTGTGGGAAACAAGTGTACTTGGGTGGATTTGACACGGCGCATGCTGCTGCAAGGGCTTATGATCGAGCTGCGATCAAGTTCCGAGGGGTTGATGCGGATATCAATTTCAATGTTAGCGATTACGATGAGGATATAAAGCAGATGAGTAATTTCACGAAGGAGGAGTTTGTGCATATTCTGCGTCGACAGAGTACTGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAGTGTGGGCGGTGGGAAGCTCGTATGGGGCAGTTTCTGGGTAAAAAGGTTTATTGCTGCAGGTATATATACCTTGGGCTATTCGACAGCGAGTTAGAGGCTGCAAGGTTTTACCAATCAGCGTATGATAGGGCTGCTATAAAATGCAATGGAAGGGAAGCGGTTACGAACTTCGAGCCCAGCATATATGAAGGGGAGGTGATTTCCCAATCTGATAATGAAGATAGCAAGCAAAGTCTTGATCTTAACCTGGGCATAGCTCCCCCTTCTTACTCTGACAGTCAAATCAAGAACACACCCAACAACGGGAGTGGTTTGAAAGCTCCATCCAGCTGGGATGATATCCCTGTCGAAAAGAGATCTATGTTTGAGCACTCTGGATCGAGATTACTGAATGTTCGGCCATCTCATGGAATCTCCAGAGCATCTGGGCATCATCCTTCCGCCTGGAATGGTAGCAATTTCTTTCCCATCTACGAGGAAACAGCAATAGAGAAGAGGATGGAAGCCGGTCCTATGCCAAATTGGGCATGGCAAGTCCAAGGTCCTTATGGCGGGGCAACTCAGACTCCACCGTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGACACTCAAATTCATTTTCCAAACATGACATTCCTCCACTCACATTTTCCACCACCAATCACTAACTCGGGCACCATGTCCCCTTTCTTCATCGGTAGCTGA 1419 0.5109 MLDLNLNADSPSDNNHTPLSVTQMESSGSFNSSVVNAADTDDSCSYGDAIAYNFAILNNNNNNTASSSAGESSLRTIQLFPATDSGVSPAWLDFSSKVDQHGAAAEQRVTPRQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKVYCCRYIYLGLFDSELEAARFYQSAYDRAAIKCNGREAVTNFEPSIYEGEVISQSDNEDSKQSLDLNLGIAPPSYSDSQIKNTPNNGSGLKAPSSWDDIPVEKRSMFEHSGSRLLNVRPSHGISRASGHHPSAWNGSNFFPIYEETAIEKRMEAGPMPNWAWQVQGPYGGATQTPPFSTAASSGFPSTIIPSAADTQIHFPNMTFLHSHFPPPITNSGTMSPFFIGS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00481 472 CDD AP2 221 290 IPR001471 GO:0003700|GO:0006355
Lapu6g00481 472 MobiDBLite consensus disorder prediction 102 131 - -
Lapu6g00481 472 Gene3D AP2/ERF domain 129 188 IPR036955 GO:0003700|GO:0006355
Lapu6g00481 472 Gene3D AP2/ERF domain 221 289 IPR036955 GO:0003700|GO:0006355
Lapu6g00481 472 PRINTS Ethylene responsive element binding protein signature 270 290 IPR001471 GO:0003700|GO:0006355
Lapu6g00481 472 PRINTS Ethylene responsive element binding protein signature 223 234 IPR001471 GO:0003700|GO:0006355
Lapu6g00481 472 MobiDBLite consensus disorder prediction 320 337 - -
Lapu6g00481 472 Pfam AP2 domain 130 178 IPR001471 GO:0003700|GO:0006355
Lapu6g00481 472 Pfam AP2 domain 221 270 IPR001471 GO:0003700|GO:0006355
Lapu6g00481 472 SUPERFAMILY DNA-binding domain 221 290 IPR016177 GO:0003677
Lapu6g00481 472 CDD AP2 130 188 IPR001471 GO:0003700|GO:0006355
Lapu6g00481 472 ProSiteProfiles AP2/ERF domain profile. 130 186 IPR001471 GO:0003700|GO:0006355
Lapu6g00481 472 FunFam AP2-like ethylene-responsive transcription factor 129 188 - -
Lapu6g00481 472 SMART rav1_2 130 192 IPR001471 GO:0003700|GO:0006355
Lapu6g00481 472 SMART rav1_2 222 294 IPR001471 GO:0003700|GO:0006355
Lapu6g00481 472 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 322 - -
Lapu6g00481 472 MobiDBLite consensus disorder prediction 1 26 - -
Lapu6g00481 472 SUPERFAMILY DNA-binding domain 129 188 IPR016177 GO:0003677
Lapu6g00481 472 MobiDBLite consensus disorder prediction 7 26 - -
Lapu6g00481 472 ProSiteProfiles AP2/ERF domain profile. 222 288 IPR001471 GO:0003700|GO:0006355
Lapu6g00481 472 MobiDBLite consensus disorder prediction 320 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00481 Lapu-Chr6 4995421 4998522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00481 114 324 AP2-EREBP Transcription Factor Family AT4G36920 75.701 7.00e-92 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lapu6g00481 AP2 2.9e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00481 K09284 - gmx:100808212 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00481 6 4995421 4998522 Lapu6g00481 6 4995421 4998522 ECH