Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00480 ATGGCAGTAGCTGCAGCAGCAAGGCCTCTGGTCTCCGTTCAAACCCTAGAGGGCGATGCAGCCCCCACCGTCCCTCTTCCTGATGTCATGAAGGCTCCCATTCGCCCTGACATTGTCAATTTCGTCCACTCCAACATTTCTCGCAACAGCCGCCAGCCCTACGCCGTCAGCAGGCGCGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGCACGGGCCGCGCCGTATCGCGTATCCCTCGTGTCCCCGGCGGTGGCACGCACCGCGCAGGTCAGGCCGCCTTTGGCAACATGTGCCGCGGTGGTCGCATGTTCGCGCCTACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAATATTCAGCAGAAGCGCCACGCCGTCGTCTCCGCCATCGCGGCCTCTGCGATCCCCTCCCTGGTCCAGGCCCGCGGCCACCGCATCGAGTCTGTCCCTGAGCTCCCCCTCGTCGTCAGCGACAGCATCGAGAGCGTGGAGAAGTCTAAAGAAGCGGTGAAAATTCTTCAGAAAATCGGCGCGTTCCCCGACGCCGAAAAAGCGAAACTGAGTCACGGAATTCGTCCTGGTAAGGGGAAAATGAGGAACCGCAGGTACATTTCTCGCAAGGGTCCTCTTATCGTGTATGGATCCGAAGGTGCTAAAGCGGTTAAAGCCTTCAGGAACATTCCCGGTGTTGAGGTGGCAAATGTTGACAGGCTTAACCTTCTGAAGCTTGCGCCGGGTGGTCACCTTGGGAGGTTTATTATTTGGACCAAGTCCGCCTTTGAGAAACTGGACTCCATTTATGGGTCGTTCGACAAGGCCTCCGAGAAGAAAAAGGGCTACCTGCTTCCCCGCCCCAAGATGGTTAACTCGGACTTGGCCCGCATCATCAACTCCGATGAGGTCCAGTCCGTAGTGAGGCCCCTTAATAAGGAGGTTAAACGCGCTACTCTGAAGAAGAACCCTCTCAAGAACCTCAATGTCATGTTGAAGCTGAATCCCTATGCTAAGACCGCTAAGAGGATGGCTCTTCTCGCTGAGAAGCAGCGCGTTGTGGCTAAGAAGGAAAAGCTTGATCAGAAGCGCAACATTGTTTCTAAGGAGGAGGCTTCTGCTATCAGAGCTGCTGGAAAAGCGTGGTATCAAACAATGGTGTCAGACTCTGATTATACAGAATTTGACAACTTCTCCAAGTGGTTGGGTGTTTCCCAGTGA 1212 0.5602 MAVAAAARPLVSVQTLEGDAAPTVPLPDVMKAPIRPDIVNFVHSNISRNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKINIQQKRHAVVSAIAASAIPSLVQARGHRIESVPELPLVVSDSIESVEKSKEAVKILQKIGAFPDAEKAKLSHGIRPGKGKMRNRRYISRKGPLIVYGSEGAKAVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKASEKKKGYLLPRPKMVNSDLARIINSDEVQSVVRPLNKEVKRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEKQRVVAKKEKLDQKRNIVSKEEASAIRAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00480 403 PANTHER 60S RIBOSOMAL PROTEIN L4 6 396 IPR045240 -
Lapu6g00480 403 Gene3D - 5 306 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lapu6g00480 403 FunFam 60S ribosomal protein L4 5 306 - -
Lapu6g00480 403 ProSitePatterns Ribosomal protein L1e signature. 118 144 IPR013000 -
Lapu6g00480 403 Pfam 60S ribosomal protein L4 C-terminal domain 278 349 IPR025755 -
Lapu6g00480 403 MobiDBLite consensus disorder prediction 52 89 - -
Lapu6g00480 403 MobiDBLite consensus disorder prediction 52 71 - -
Lapu6g00480 403 SUPERFAMILY Ribosomal protein L4 10 265 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lapu6g00480 403 Pfam Ribosomal protein L4/L1 family 24 264 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00480 Lapu-Chr6 4978226 4981188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00480 4 403 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 79.455 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00480 K02930 - gmx:100796712 749.584