Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00479 ATGGCAATGGCGCCCTCAACTCCCTCTAGCAGCTCTGGCAAGAAGGTTAGAAAGCCTTATACTATCACCAAGTCTAGGGAGAGGTGGTCTGAAGAAGAGCATGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTTGGTTCAAAAACAGTTATTCAGATTAGAAGTCATGCCCAGAAGTACTTTCTGAAAGTTCAAAAGAACGGGACAGTAGCACATGTGCCTCCTCCTCGTCCTAAGCGTAAAGCAGCTCATCCTTACCCACAAAAGGCATCCAAAAATGGGTATGTCACGTGGGATGAAAATTTCTTGCTAATGAATTCTGAATGCAACAGATCAGTGCCCTATCAGGATGAACTCAACAATCTTCATGGAGATGAAGCTGATATTGGATTAAAGGACGTGGTATTGATTGGCAACAGCTGTCTTACTGATATTGTGAACTCTACTAGAAAGTTGTCGGCTACTGAGTTGCCAAAACAAGGGAAACAGACTCAGGTGCTTCATGGTTTACCAAATTTTGCTGAAGTATATAGCTTCATTGGAAGTATTTTTGATCCAGACACAAAAGGCCATGTCCAGAAGCTGAATGAAATGGATCCCATAAATTTTGAAACTGTGAGTAGAATAAAACTTTTTCAATATCATCATTGA 681 0.4038 MAMAPSTPSSSSGKKVRKPYTITKSRERWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNGYVTWDENFLLMNSECNRSVPYQDELNNLHGDEADIGLKDVVLIGNSCLTDIVNSTRKLSATELPKQGKQTQVLHGLPNFAEVYSFIGSIFDPDTKGHVQKLNEMDPINFETVSRIKLFQYHH* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00479 226 Gene3D - 28 76 - -
Lapu6g00479 226 NCBIfam myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Lapu6g00479 226 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Lapu6g00479 226 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Lapu6g00479 226 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Lapu6g00479 226 CDD SANT 28 71 IPR001005 -
Lapu6g00479 226 FunFam protein REVEILLE 6 isoform X1 28 76 - -
Lapu6g00479 226 SMART sant 25 73 IPR001005 -
Lapu6g00479 226 MobiDBLite consensus disorder prediction 1 21 - -
Lapu6g00479 226 MobiDBLite consensus disorder prediction 79 98 - -
Lapu6g00479 226 MobiDBLite consensus disorder prediction 1 18 - -
Lapu6g00479 226 PANTHER SWI/SNF COMPLEX-RELATED 12 216 - -
Lapu6g00479 226 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Lapu6g00479 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00479 Lapu-Chr6 4973436 4976904 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu6g00479 Myb_DNA-binding 8.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00479 - - gmx:100783482 337.806