Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00474 ATGGATATTAAGGAAGCAGAAAGGGTGGTGATTGCCAAACCTGTTGCTTCAAGGCCTAATTGTTCTACTTTCAAATCTTTCTCAGAGCTCTTAGCTGGTGCAATCAATGTTTCTCCTGATATTGCATCTTCTCAAGCTACAATTTCTGCCATTAGACCCAAGACTGTGAGGTTCAAGCCAGCAGCATTGAATCACCCCCCTGCTGGGTTTGATTCTTCTCAGACTGATACTTTTGGAGCTGCACTTAGTAACTCTTCTGATAAGAGTCCTAAACTTGACACCAATCAGTCCCTCATATACAAGCCAACGGCAAAACTCGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGAAGGGAAATTGCAGCACTGGTAAACAGCAAACACGGCAATTAATGGAGGCCAATTTTCAACATTCCATCAATGAGAAGTTTAGAACCAACATGAGTTCACATCTTGATCAGAGTATTGTTCCGCATGCAGAAATAAATCAGATCAGTGAGCCTAGTAAGATGGTGCAGCAGAACACAGAGGAAGACCAAAAGACTTTAACATCCTCAGCGAATTGTGATCGACCTTCTTATGATGGGTACAATTGGAGGAAATATGGTCAGAAGCAAGTAAAAGGGAGTGAGTACCCCCGAAGTTATTACAAGTGCACACATCCTAATTGCCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAAATTGTTTATAAAGGTGAACACAACCATTCGAAGCCACAGCTTCCTAAGCGAAACACAGCAACAGGGACACAAGGTTCGGGGGTGGTGTCCGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAATGATGGCAATGAAAGTAGAGTTGAGAACACAGGAGGACTGTCTGTGCTTTCAGATTATTATGTCAAAGTTCCACAGCCTAATGATTCTGTTCTAAATATTGGTGCAACTAATGCTGGAGGAGGAAGCACGGAAAACTCGTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGTTTTGAGGCACAGGAAGATGAACCCAGAAGTAAAAGAAGGAAAAATGAGAATCAATCTAATGAAGTAGCATTATCAGAGGAAGGTTTAGTAGAGCCGCGGATTGTGATGCAAAGTTTCACTGATTCTGAAATACTTGGAGATGGATTTCGCTGGAGGAAATATGGACAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGTTATTATAGATGTACTAATATTAAGTGCAACGTTCGCAAACACGTGGAAAGAGCAATAGATGACCCGAGATCATTTGTGACCACATATGAGGGAAAACACAATCATGATATGCCTCTCAAGAACACAGGAAATGTGGCCTCTGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATGA 1422 0.4205 MDIKEAERVVIAKPVASRPNCSTFKSFSELLAGAINVSPDIASSQATISAIRPKTVRFKPAALNHPPAGFDSSQTDTFGAALSNSSDKSPKLDTNQSLIYKPTAKLVSKTTVSLLANMKGNCSTGKQQTRQLMEANFQHSINEKFRTNMSSHLDQSIVPHAEINQISEPSKMVQQNTEEDQKTLTSSANCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHSKPQLPKRNTATGTQGSGVVSDGMVQDMWSNSHSERNDGNESRVENTGGLSVLSDYYVKVPQPNDSVLNIGATNAGGGSTENSCGLSGECEEGSKGFEAQEDEPRSKRRKNENQSNEVALSEEGLVEPRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPRSFVTTYEGKHNHDMPLKNTGNVASERDSQASLSKDKP* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00474 473 MobiDBLite consensus disorder prediction 246 272 - -
Lapu6g00474 473 MobiDBLite consensus disorder prediction 344 366 - -
Lapu6g00474 473 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00474 473 SMART WRKY_cls 391 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00474 473 MobiDBLite consensus disorder prediction 255 272 - -
Lapu6g00474 473 FunFam WRKY transcription factor 57 377 451 - -
Lapu6g00474 473 SUPERFAMILY WRKY DNA-binding domain 384 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g00474 473 ProSiteProfiles WRKY domain profile. 386 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00474 473 MobiDBLite consensus disorder prediction 322 337 - -
Lapu6g00474 473 MobiDBLite consensus disorder prediction 322 371 - -
Lapu6g00474 473 SUPERFAMILY WRKY DNA-binding domain 193 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g00474 473 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 136 463 IPR044810 GO:0003700
Lapu6g00474 473 Pfam WRKY DNA -binding domain 393 448 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00474 473 Pfam WRKY DNA -binding domain 196 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00474 473 MobiDBLite consensus disorder prediction 442 473 - -
Lapu6g00474 473 MobiDBLite consensus disorder prediction 62 94 - -
Lapu6g00474 473 Gene3D WRKY domain 377 452 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g00474 473 Gene3D WRKY domain 170 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g00474 473 ProSiteProfiles WRKY domain profile. 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00474 473 MobiDBLite consensus disorder prediction 68 94 - -
Lapu6g00474 473 FunFam WRKY transcription factor 180 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00474 Lapu-Chr6 4932360 4938852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00474 93 452 WRKY Transcription Factor Family AT2G37260 46.825 3.13e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu6g00474 WRKY 7.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00474 - - vra:106757963 892.493