Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00449 ATGAAGAGACAGAGAGAAATGGAGGTGTTAGAGAACATAGATTTGGCAAATTGTCTAATGTTTCTCTCATGCCCCCAACAAAAGAAGTTACAAGCAAAGCATGTTGAGGATGTGGAATTTGAGTGCAAGACATGCAACCGAAAGTTCTCGTCCTTTCAAGCATTGGGTGGCCATAGGGCTAGCCACAAAAGGTCGAAACTTGAAGGGGATGAACTCAAAGCACATGCTATATCTCTAAGTTTGGGAATCAATAAACCCAAAATGCACGAGTGTTCCATTTGTGGACAAGAATTCTCATTGGGACAAGCCCTTGGAGGGCACATGAGAAGGCATAGAGCTTCCATCAGCCAAGATTTCTCTTCGATCAAACATGTTGTTGCACAAGTACCAGTTCTCAAAAGATCAAATAGCACGAGGGGTATGTGCATGGACTTGAACCTAACACCGTTAGAGAATGACTTCAAGTTATTGTTTGGAAAGATGGCACCCAATGCTGGTGCCCTAGTCTGA 510 0.4333 MKRQREMEVLENIDLANCLMFLSCPQQKKLQAKHVEDVEFECKTCNRKFSSFQALGGHRASHKRSKLEGDELKAHAISLSLGINKPKMHECSICGQEFSLGQALGGHMRRHRASISQDFSSIKHVVAQVPVLKRSNSTRGMCMDLNLTPLENDFKLLFGKMAPNAGALV* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00449 169 PANTHER ZINC FINGER PROTEIN ZAT5 11 152 - -
Lapu6g00449 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Lapu6g00449 169 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Lapu6g00449 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Lapu6g00449 169 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Lapu6g00449 169 Pfam C2H2-type zinc finger 89 113 - -
Lapu6g00449 169 Pfam C2H2-type zinc finger 40 64 - -
Lapu6g00449 169 Gene3D Classic Zinc Finger 37 111 - -
Lapu6g00449 169 SUPERFAMILY beta-beta-alpha zinc fingers 40 111 IPR036236 -
Lapu6g00449 169 SMART c2h2final6 40 62 IPR013087 -
Lapu6g00449 169 SMART c2h2final6 89 111 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00449 Lapu-Chr6 4649679 4650188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00449 1 160 C2H2 Transcription Factor Family AT2G37430 50.595 1.04e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g00449 zf-C2H2_6 6.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00449 - - gmx:100806997 274.248