Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00439 ATGGCTTCGCGGCGGCTCCGGGACCTCCAATCCCAAGCGGCGAACAAGATCTGCGTCGACTGTTCCCAGAAGAATCCGCAATGGGCGTCGGTGTCGTACGGAGTCTTCATGTGCTTGGAGTGCTCCGGCAAGCACCGTGGCCTCGGCGTCCACATCTCCTTCGTTCGATCCGTTACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAAGCTGGAGGCAACGACAAACTCAACTCCTTCCTCGCGCAATACGGCATCTCCAAGGAAACTGACATAATCGCCAAGTACAATTCCAACGCTGCATCCGTCTACCGCGACCGCATCCAGGCCATCGCCGACGGCCGCCCGTGGCGGGATCCCCCCGTCGTCAAGGAGACCATCCGCTCCTCCGCCTCGAAGGGGAAGCCACCCCTCGCGGCCAGTAACAAAGGCGGATGGGACAATTGGGACGCGGACGACGGGTTCGGATCGCCGCGAGGCGGCTCCGATCTGCGGCGGAACCAGTCCACCGGCGACGTCAGGGGGTTCGGCGGCGGCGGGAGCGTGGCGAGGTCGAAGTCGACGGAGGATATGTATACGCGCTCACAGCTGGAGGCCTCTGCTGCCAATAAGGAAGAGTTCTTCGCGAGGAAGAGGGCGGAGAATGAGTCGCGACCGGAGGGACTTCCGCCGTCGCAAGGTGGCAAGTACGTCGGGTTCGGATCTGGCCCCGCCCCGAGCCAAAGGGGTGGTAATCAGCAAAACGATTATTTATCTGTCGTTTCTCAGGGATTCGGTAAATTATCGTTGGCGGCTGCTTCTGCAGCTCAGTCTGCTGCCAATGTCGTTCAGGCCGGGACAAAAGAGATCTCTGCTAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAAACATCAGAGATTGGACAAAGGACATGGGGTATAATGAGAGGGGTCATGGCAATGGCTACACAAAAGGTCGAGGAATACACTAGAGATAACCCAAATTGGACGTCTGATAACTGGAAACGAAATGAAACTGATAAAAATGGTTCCTATCCGGAGTTTAATCAAGAGAACAAAGGATGGAATTCTTCTGCCAGAGAAGGACAATACTCTACGGGTGGACAAACTAATTCTTATAATTCTAACTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCTGCTAGAGGATCGACTCATCAGTCATCAGGCATGCAGTCTGATACTTATAACTCTAGCTCTTGGGATGATTGGGACCATGAAGATACAAGGAAGAAAGAACCAGCTAAAGGGTCAGCTGCCCATAGCAGTGATGGTTGGGCTGGTTGGGATAACGCCAAAGATGATGGATTTGATGATTTCTATGGGAATGCATCTAATAATAAAACTGCTGGTCATAATGAGAAGGCGGGTGTTGCCTGGACAGGAGGAGGTTTTCTCTAA 1470 0.5286 MASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNSFLAQYGISKETDIIAKYNSNAASVYRDRIQAIADGRPWRDPPVVKETIRSSASKGKPPLAASNKGGWDNWDADDGFGSPRGGSDLRRNQSTGDVRGFGGGGSVARSKSTEDMYTRSQLEASAANKEEFFARKRAENESRPEGLPPSQGGKYVGFGSGPAPSQRGGNQQNDYLSVVSQGFGKLSLAAASAAQSAANVVQAGTKEISAKVKEGGYDYKVNETVNVVSQKTSEIGQRTWGIMRGVMAMATQKVEEYTRDNPNWTSDNWKRNETDKNGSYPEFNQENKGWNSSAREGQYSTGGQTNSYNSNSWDDWDHKDSRKEEPARGSTHQSSGMQSDTYNSSSWDDWDHEDTRKKEPAKGSAAHSSDGWAGWDNAKDDGFDDFYGNASNNKTAGHNEKAGVAWTGGGFL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00439 489 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Lapu6g00439 489 MobiDBLite consensus disorder prediction 335 489 - -
Lapu6g00439 489 MobiDBLite consensus disorder prediction 214 250 - -
Lapu6g00439 489 MobiDBLite consensus disorder prediction 423 441 - -
Lapu6g00439 489 MobiDBLite consensus disorder prediction 117 195 - -
Lapu6g00439 489 CDD ArfGap_ArfGap1 2 116 - -
Lapu6g00439 489 MobiDBLite consensus disorder prediction 407 422 - -
Lapu6g00439 489 SUPERFAMILY ArfGap/RecO-like zinc finger 3 109 IPR037278 -
Lapu6g00439 489 PRINTS HIV Rev interacting protein signature 55 76 IPR001164 GO:0005096
Lapu6g00439 489 PRINTS HIV Rev interacting protein signature 15 34 IPR001164 GO:0005096
Lapu6g00439 489 PRINTS HIV Rev interacting protein signature 34 51 IPR001164 GO:0005096
Lapu6g00439 489 SMART arf_gap_3 3 119 IPR001164 GO:0005096
Lapu6g00439 489 ProSiteProfiles ARF GTPase-activating proteins domain profile. 3 109 IPR001164 GO:0005096
Lapu6g00439 489 MobiDBLite consensus disorder prediction 390 406 - -
Lapu6g00439 489 FunFam ADP-ribosylation factor GTPase-activating protein 1 128 - -
Lapu6g00439 489 Pfam Putative GTPase activating protein for Arf 4 107 IPR001164 GO:0005096
Lapu6g00439 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 411 IPR044519 GO:0005096|GO:0016192
Lapu6g00439 489 MobiDBLite consensus disorder prediction 355 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00439 Lapu-Chr6 4524682 4530684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00439 4 86 C2H2 Transcription Factor Family AT4G21160 50.000 3.36e-22 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00439 6 4524682 4530684 Lapu6g00439 6 4524682 4530684 ECH