Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00431 ATGGACGACCACAAACAGTGTCCCATTCTCACGCCTTCGGGATTACCTCGCCAAAACAAACCCTCTATTGCAGACGACGATGTTATGGAGCTGCTATGGCATAACGGCCAGGTCGTGATGCAGAATCAGAACCACCGTTCTCTCAGAAAATCCACGCCGCCGCCCAGAAACTCCCACCATGACTCCGCCGCCGGTCCTTCCACGCCCACGGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCCTGGCTTCACTATCCAATTGACGACGATGTACCTCCTTTGGATCAGGCTTTCTGCGCTGACTTCCTCTACTCGCCGCCCACCGTTAACAACAGCAGCGCCATGCAAACTCTCGCTACGTCTCAGCTGACGGAGCACCGCCCGATGTCCGCATCGCCTCGACCTCCAATTCCGCCGCCGAGGCGGCCGGAACCGAAGACACCGAACTTCGCGTACTTTGCCAGGCACAACACGAGAGCCGCCGACCAGAGCGTGAAGGCCGCTGCGAAAGAATCCACAGTGGTGGATTCGTGTGAGACACCAGCCGCCACTGCAGCGGCGGTTTCGAGAGTTTCGGAAACTGTGAGGAACACGGCGGAACTGACGGAAGGAGGCGCTGGCGCTGGCGCTGGCGCTCCGGTGCCTTCGACAAGTGCCGGCGGCGGCGGCGGCGGCGGCGGAAGCGGAAGGAGCACGATGATGTGCGACGTGACTATGGTGTCGTCGCCGGGCGGTTCGAGTAGCAGCGGCGAGCCGGTTCAGGTGGCAGCGGCGGAGGCGGTGGAGGACCGGAAGCGGAAGGGTCGTGAGGCGGAGGAATGGGAGTCTCAGAGCGAGGATGTTGATTTTGAATCTGAAGCAAAGAAACAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCACGATGTAACAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCAGGAATCCAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCTGTAATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCAGCAGCAACTGCGGCTGCTCATTTGGGACCAAGGTTTCCAATGCCTCCTTTCCACATGCCGCGTGTACCTGCTCCTGATTCATCTAGAATGCAAGCAGAAAATCAGTCAGATAATAATATGGTTGCAGCTGGTCCACATGATCCAAACCAGTCACGTCTCCCAAACTTCTCGGATCCTTATCAACAATATATTGGTCCCCACCAAATGCAGTTTCAAGTAATTCAGTAA 1488 0.5423 MDDHKQCPILTPSGLPRQNKPSIADDDVMELLWHNGQVVMQNQNHRSLRKSTPPPRNSHHDSAAGPSTPTEIRPQLDNFNQHLFMQEGEMASWLHYPIDDDVPPLDQAFCADFLYSPPTVNNSSAMQTLATSQLTEHRPMSASPRPPIPPPRRPEPKTPNFAYFARHNTRAADQSVKAAAKESTVVDSCETPAATAAAVSRVSETVRNTAELTEGGAGAGAGAPVPSTSAGGGGGGGGSGRSTMMCDVTMVSSPGGSSSSGEPVQVAAAEAVEDRKRKGREAEEWESQSEDVDFESEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPAPDSSRMQAENQSDNNMVAAGPHDPNQSRLPNFSDPYQQYIGPHQMQFQVIQ* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00431 495 CDD bHLH_AtPIF_like 312 375 IPR047265 -
Lapu6g00431 495 MobiDBLite consensus disorder prediction 213 320 - -
Lapu6g00431 495 MobiDBLite consensus disorder prediction 1 22 - -
Lapu6g00431 495 PANTHER TRANSCRIPTION FACTOR PIF3 18 477 IPR044273 GO:0003700|GO:0006355
Lapu6g00431 495 MobiDBLite consensus disorder prediction 269 285 - -
Lapu6g00431 495 Gene3D - 307 370 IPR036638 GO:0046983
Lapu6g00431 495 MobiDBLite consensus disorder prediction 245 264 - -
Lapu6g00431 495 MobiDBLite consensus disorder prediction 440 476 - -
Lapu6g00431 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 378 IPR036638 GO:0046983
Lapu6g00431 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
Lapu6g00431 495 Coils Coil 268 288 - -
Lapu6g00431 495 MobiDBLite consensus disorder prediction 43 74 - -
Lapu6g00431 495 MobiDBLite consensus disorder prediction 142 157 - -
Lapu6g00431 495 MobiDBLite consensus disorder prediction 448 476 - -
Lapu6g00431 495 FunFam Basic helix-loop-helix transcription factor 307 370 - -
Lapu6g00431 495 SMART finulus 318 367 IPR011598 GO:0046983
Lapu6g00431 495 MobiDBLite consensus disorder prediction 130 158 - -
Lapu6g00431 495 Pfam Helix-loop-helix DNA-binding domain 316 362 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00431 Lapu-Chr6 4429293 4433332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00431 15 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.507 3.45e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g00431 HLH 6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00431 - - gmx:100797225 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00431 6 4429293 4433332 Lapu6g00431 6 4429293 4433332 ECH