Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00421 ATGACCGCCGTTGCCGGACGCTCTGCCGGAATCTCGCCGCCTCCCACTCTCTCTCCTCCTGACCATGCTCATCGCCGGTGTTGCCTTCGGCTAGAGAGAATGCCGGTGTCGGTCGTCTTCTTCCTTGCTTTTCTCAACTTGCTTCTCTCTTCCCAAGTGAAGTCGTTTTCTTTGAGTGTGTCATTTGCTTCATCAGAACAAGCTAAAATGTGGTTTGTTAAACCTTCTTCTGGACCTTCTTCTGCACCCATTCCATCTCCAAATCATCAAGGTCCTCACATGACTCCAAGACAGAGATATCATTATCATCACCGTCGCCATCACAGCACGAGACCTTACATAGTGGCTCCACCCCCTTCAAAAGACCAAGCTTGTGACCAAATCTGCACTGAACCCCTTACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCCGACTTACACTGGATGTAGCACCTTATGCTGTTTTTCCAGTAATGACCGAGTTAGAGAATGAAATTGCATTAGGCACGTATCTAGAGCAGAGTCAGGTGAAGATAATGGGTGCCACGGCAGACAGTCAAAATCAGGGAAGAACTGTTGTTGATATTAACTTGGTTCCGCTGGGAGAGAAATTTGACAATACAACCGCAGCTCTGACATATGAGAGGTTTTGGCACAAGAAGGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCTGTTGTGTACATTACTTATCCAGGAATGCCATCTTCGCCCCCATATGGATCTTTAGTTGGGAGTGGTCCCAGTCAAAGTGTTGAGGGCATTCTTCCTGTCAGTGCCAACTTTGTCAACAAGAACCAGAAAATGAATGTCAGGACCATAATCATTATTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTGGTGGGAGCATTTTCAATTATTTTGAAATGGAGGAAGACTAGGAGACCATCCAGTGCTGTTGGCCCTGCATTCACATCATCTCTGAACAAGAGATCAGGCTTGGGGTCTATGTTGTCAAGCAGTATTACAAGCTCAACATCAGTATCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACAGATAAGTTCAGTTCAAAGAGAGTACTGGGCGAAGGAGGATTTGGACGTGTTTATAGTGGAACATTGGAAGATGGGGCTGAAGTTGCAGTTAAGCTGCTTACAAGAGATAATCAGAATGGAGACCGTGAATTTATTGCAGAGGTTGAGATGCTAAGCCGTTTGCATCACCGTAATCTAGTGAAACTGATTGGTATATGCATTGAGGGACGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTCGAGTCTCATCTGCATGGTGATGACAAGATAAAGGGGATGCTAGATTGGGAAGCGCGGATGAAAATCGCTCTAGGAGCTGCAAGAGGATTGGCCTATCTTCATGAGGATTCCAATCCCCGTGTAATTCATCGAGACTTTAAAGCTAGTAACGTGTTACTAGAAGATGACTTTACTCCCAAAGTTTCTGATTTTGGATTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGAGTGATGGGAACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGGCATTTACTCGTCAAAAGTGATGTTTATAGTTATGGTGTTGTGCTACTTGAACTTCTCACGGGCAGAAAGCCAGTAGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCGCGGCCAATGTTGACGAGTAGAGAAGGTCTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGTTACAGCTTTGATGACATGGCAAAGGTTGCTGCAATCGCTTCAATGTGTGTTCATCCGGAGGTCACACAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTCAAGTTAATATACAATGACACAGATGAGACTTGTGGAGATTGTTGTAGTCAGAAGGATTCCTCTGCTCAGGAGTCCGATTTTAGAGGTGACCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCGGGAGGGTTAACTCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATCACTATGGAATACAGTTCTGGTCCACTTGAAGAAACAGAAAACAGACCGTTTTCAACATCAAGCCTGATTGGAGATGAAATATCTTTACCAATTAGGCATGGGAATAGATCAGGCCCCTTAAGAACAGTCCGAAGCAAGCTGTCCTTACATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCCAAGCGTAATTGGAATGATGGTTATTGGGTTTAA 2346 0.4476 MTAVAGRSAGISPPPTLSPPDHAHRRCCLRLERMPVSVVFFLAFLNLLLSSQVKSFSLSVSFASSEQAKMWFVKPSSGPSSAPIPSPNHQGPHMTPRQRYHYHHRRHHSTRPYIVAPPPSKDQACDQICTEPLTSTPFGSPCGCVFPMKVRLTLDVAPYAVFPVMTELENEIALGTYLEQSQVKIMGATADSQNQGRTVVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPGMPSSPPYGSLVGSGPSQSVEGILPVSANFVNKNQKMNVRTIIIIALSSFVLLLVLVGAFSIILKWRKTRRPSSAVGPAFTSSLNKRSGLGSMLSSSITSSTSVSLMSTMATSILSVKTFSLSELEKATDKFSSKRVLGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPMLTSREGLEQLVDPSLAGSYSFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEETENRPFSTSSLIGDEISLPIRHGNRSGPLRTVRSKLSLHRFTGSRSEHGGPSSKRNWNDGYWV* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00421 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Lapu6g00421 781 Pfam Protein tyrosine and serine/threonine kinase 380 650 IPR001245 GO:0004672|GO:0006468
Lapu6g00421 781 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
Lapu6g00421 781 MobiDBLite consensus disorder prediction 759 781 - -
Lapu6g00421 781 FunFam receptor-like serine/threonine-protein kinase ALE2 351 453 - -
Lapu6g00421 781 Gene3D Transferase(Phosphotransferase) domain 1 454 675 - -
Lapu6g00421 781 ProSiteProfiles Protein kinase domain profile. 378 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00421 781 CDD STKc_IRAK 384 653 - -
Lapu6g00421 781 FunFam Receptor-like serine/threonine-protein kinase ALE2 454 671 - -
Lapu6g00421 781 PANTHER OS01G0750732 PROTEIN 117 672 - -
Lapu6g00421 781 SUPERFAMILY Protein kinase-like (PK-like) 356 653 IPR011009 -
Lapu6g00421 781 MobiDBLite consensus disorder prediction 1 22 - -
Lapu6g00421 781 Gene3D Phosphorylase Kinase; domain 1 349 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00421 Lapu-Chr6 4224046 4231676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00421 128 770 Receptor kinase-like Gene Family AT5G56890 55.204 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lapu6g00421 PK_Tyr_Ser-Thr 9.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00421 - - gmx:100792309 1380.16