Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00412 ATGAAACCCAAGAACTCAAGTTCCCAATTAAAAGCACTTGTTGTAGATGATGATAGGGTCAACAGAATGACTCATCAAGCGCTGTTGAAAAAAGTTGGGGTGGAAAATCTTGCTTCGGTGGAAAATGGCAAAAAAGCTGTGGACCTTCATTGCAGTGGTGAAAGTTTTGACCTAATTCTCATGGATAAAGACATGCCTGTCATGAATGGAATTGAGGCAACAAAGCAGCTTCGTTCAATGGGCATTCGTGACATGATTGTTGGTGTCTCATCATCACGTGGTGGAGAGACTGTGCAACAATTCATGGAAGCAGGACTAGATGACTACTACACAAAACCCTTAACCGTTGACACGCTTAAAGCAATTCTTGATAAGATCAAGTCATGA 387 0.416 MKPKNSSSQLKALVVDDDRVNRMTHQALLKKVGVENLASVENGKKAVDLHCSGESFDLILMDKDMPVMNGIEATKQLRSMGIRDMIVGVSSSRGGETVQQFMEAGLDDYYTKPLTVDTLKAILDKIKS* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00412 128 SUPERFAMILY CheY-like 9 126 IPR011006 -
Lapu6g00412 128 CDD REC_hyHK_CKI1_RcsC-like 13 123 - -
Lapu6g00412 128 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 127 - -
Lapu6g00412 128 SMART REC_2 10 123 IPR001789 GO:0000160
Lapu6g00412 128 Pfam Response regulator receiver domain 13 123 IPR001789 GO:0000160
Lapu6g00412 128 Gene3D - 1 128 - -
Lapu6g00412 128 ProSiteProfiles Response regulatory domain profile. 11 127 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00412 Lapu-Chr6 4135829 4140014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00412 10 115 Response Regulator Gene Family AT3G04280 48.148 1.06e-25 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu6g00412 Response_reg 1.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00412 - - var:108322984 236.884