Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00401 ATGTCTAAAGATGATAACTCTTCACAGGATTCTTCATCTGATATTGAATTGGCTCTTTCCTTGACCCTCTCTTCCTATGCCACACCTTCCTCATTCAGTGGAACTACCATTCTCACTTCTGGGACCAAGAGGCCTGCTTCTATTTCTGATTCTGATTCTGATTCTGTTCTTCCTGCTACCTCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCGTACAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACGGAAGTTTTCAATTCTACAGTTGATAAAAGAGCAAGCACTAGTACTGGGGTTAGGATGAGTGCAGATGGTGGCAGTGATGGTAACAACACTGTTTCCAAAGAAAAAGTAAATCTCAGGAATTCTCTGTTTGTGAAAGTAAAAATGGATGGAATACCAATTGGAAGGAAGGTTGATTTGAATGCTCATGGTTCCTATGAAACCTTGGCTCAAACTTTAAAGGAAATGTTTGAAGAATCAACTACAGTCCTCACTAACAAAGTAGGATCAAATGGAGAAGATCATGGTCCTATGATTGGAGCAGATGGACATTCAAAGTGGCTGGATGGTTCTTCCGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACATGAAGCTAATGGACTTGCTCCAAGATTGGAAAGAAGAATGGCAGATCGAAATGCAAGCTCATATAGATAA 777 0.4196 MSKDDNSSQDSSSDIELALSLTLSSYATPSSFSGTTILTSGTKRPASISDSDSDSVLPATSPSQVVGWPPLGAYRMNSYNSHAKSPATEVFNSTVDKRASTSTGVRMSADGGSDGNNTVSKEKVNLRNSLFVKVKMDGIPIGRKVDLNAHGSYETLAQTLKEMFEESTTVLTNKVGSNGEDHGPMIGADGHSKWLDGSSDFVLTYEDKEGDWMLVGDVPWWMFLNSVRRLRIMRTHEANGLAPRLERRMADRNASSYR* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00401 258 Pfam AUX/IAA family 51 244 IPR033389 -
Lapu6g00401 258 MobiDBLite consensus disorder prediction 27 62 - -
Lapu6g00401 258 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 239 IPR003311 GO:0005634|GO:0006355
Lapu6g00401 258 ProSiteProfiles PB1 domain profile. 129 237 IPR000270 GO:0005515
Lapu6g00401 258 SUPERFAMILY CAD & PB1 domains 123 233 - -
Lapu6g00401 258 Gene3D - 124 247 - -
Lapu6g00401 258 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00401 Lapu-Chr6 4018503 4021241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00401 133 254 B3 DNA Binding Superfamily AT4G23980 31.967 5.69e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu6g00401 AUX_IAA 8e-58 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00401 6 4018503 4021241 Lapu6g00401 6 4018503 4021241 ECH
Lapu6g00401 6 4018503 4021241 Lapu7g01405 7 29493329 29496383 PCT