Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00395 ATGGCGCCGAATCCAAGAGTGGTAGCGGCGTTTTCAGCAATGGCGAATCTCGGGATTCACGAATCAAAAGTAAAACCAGTGTTGAAGAGGCTGCTTAAATTGTATGATAAAAATTGGGAACTCATTGAAGAAGAGAGTTACAGGGTTCTGGCTGATGCAATATTTGAGGAGGAAGAAAATAAGTTGCTTGAACCAGACCAGAAGAACAAAAATAAGAAGGATGGAGAAATGGATGATGAGGAAGCTCATATGCTCGAGGAGCCTTTGCGTCCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATATTCACGCGCTCTAACTAGTGGCGGCCCCAGCTCAGCTGCCTTTCCGTTGAAAACTCCTAAATTGGAAGATGGCACAGTGGCGGAAAGTACTTCCAGACTGCAGCCTCAAAGCAGGGTTGCATTATCTGATGGAAATGCAAGGAATGACGCTCCTCATGTTCCCCCACAAGATGCTATTGTCAACAGGGGAAAGCAACCTGTATCACCTCAAGTTATATCCAGAGGGGGAATGTCTATGCCTGACCGTACTTCCCTTGCAGAACCATTGAAAGAGCCAGCTGCTGAACCAAGAGCTGCTCCATTGGCCAGTAACAAAATGCCTCTTCCATTTACTTTGATCAAGCCCAAGGATGAGCCTGTTGATGATTTGCCAGATTGTGAGATTCCCCTTGCTGTGATTCCATACGAACAATCAAGTGGAGGAGACTCTCTAATGGGTGCAGCTGAAAAGCAAGATGGCTATGATACTATGGTATCACAATGCAGAGATGAAGACGTTGAGCATGAATATACTCTTTCTTCCTCAATTGAAGAAGCAACTTCTAATGCAGATATAGCATTGTCATCTATGGGAGAGGAACAAGGTGTAAAGATAACACAAACTGACAATGTTTCAAAGGAATCTGGGACCGTCGTCTCACCTATTGTGAGAGGAAATAAAGATCCAGTCATTGCTAATGGATCACTCAGTGTTAGGTCTTCTCCTGCCATGGCTGAACCTGAAGTTCCTAGTTATCTACTCTGCCCAAGTGATCAGGATGATGTTGCACTAGCTTCGAAGAAGGTTGGGACGAATGGTTTCTTACAAAGTAATGATGGGAAGGAGCCAGGGGATCCTGTATCCGCAAATTCAGGTACCTTAGTGGTTGTTCCAAAATGTGAGCTTACAACTGAAAATGATGTAAGGGCTGTTCACGATGTTAATGACCTAGCAAAGGGTGAAGAAAGAGTGAATATTTCATGGGTGAATAACTCTACTGATGATCTCCCACCACCCTTTCACTACATACCCCGAAACCTTGTGTACCGAGATGCTTATGTTAATTTTTCTCTGTCTCGTATTGGTAATGAGGATTGTTGTTCAACTTGTAAGGGCAATTGTATATTGTCATCTAAACCATGTCCTTGTACAAATAAAAATGGGGGTGAATTTGCTTTTACTGCACAAGGCCTACTAAAGGAAGCGTTCTTGGATGAGTGTATCGCCATCAACCGTGATTCCCAAAATTATTTCTATTGCAAAACCTGTCCGTTTGAACAATCAAAAAATGATGATTGTTTAGAACCATGTAAAGGACACTTAAAGCAGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGGAAAACATTGTGGCAATCGAGTTGTCCAGCGTGGAATAAGTTGCAAGTTGCAGGTGTTCTTAACTTCAAATGGAAAGGGTTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGCACATTTGTATGCGAGTTTGTTGGGGAAATTTTAACTGTCAAAGAGTTGCACGAGAGGAACATGAAATATCCAAAAAGTGGGAAATATACATTCCCGGTTTTATTGGATGCAGATTGGGATTTAGGAGTTGTGAAGGATAGGGAAGCTCTTTGCTTATACGCAGCATCATATGGAAATGCTGCTAGATTTATTAATCACAGATGCTTGGACGCAAACTTGATTGAGATCCCAGTAGAAGTTGAGTGCCCAACTCATCAGTACTATCATTCTGCGTTCTTTGCATCCAGAAAAATAGCAGCACAAGAAGAACTCACTTGGGATTACGGCATCAACTTTGATGATGATGATGAGTCTGTTGAGCTTTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATTAAGCGATCAAACACAATCTTAACTTCCTAA 2205 0.4254 MAPNPRVVAAFSAMANLGIHESKVKPVLKRLLKLYDKNWELIEEESYRVLADAIFEEEENKLLEPDQKNKNKKDGEMDDEEAHMLEEPLRPLKRLRLRGQEGQYSRALTSGGPSSAAFPLKTPKLEDGTVAESTSRLQPQSRVALSDGNARNDAPHVPPQDAIVNRGKQPVSPQVISRGGMSMPDRTSLAEPLKEPAAEPRAAPLASNKMPLPFTLIKPKDEPVDDLPDCEIPLAVIPYEQSSGGDSLMGAAEKQDGYDTMVSQCRDEDVEHEYTLSSSIEEATSNADIALSSMGEEQGVKITQTDNVSKESGTVVSPIVRGNKDPVIANGSLSVRSSPAMAEPEVPSYLLCPSDQDDVALASKKVGTNGFLQSNDGKEPGDPVSANSGTLVVVPKCELTTENDVRAVHDVNDLAKGEERVNISWVNNSTDDLPPPFHYIPRNLVYRDAYVNFSLSRIGNEDCCSTCKGNCILSSKPCPCTNKNGGEFAFTAQGLLKEAFLDECIAINRDSQNYFYCKTCPFEQSKNDDCLEPCKGHLKQKFIKECWSKCGCGKHCGNRVVQRGISCKLQVFLTSNGKGWGLRTLEDLPKGTFVCEFVGEILTVKELHERNMKYPKSGKYTFPVLLDADWDLGVVKDREALCLYAASYGNAARFINHRCLDANLIEIPVEVECPTHQYYHSAFFASRKIAAQEELTWDYGINFDDDDESVELFQCRCGSKFCRNIKRSNTILTS* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00395 734 ProSiteProfiles Pre-SET domain profile. 467 564 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu6g00395 734 Gene3D - 1 60 IPR043017 -
Lapu6g00395 734 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 728 IPR025776 -
Lapu6g00395 734 CDD SET_SETDB-like 435 700 - -
Lapu6g00395 734 SMART preset_2 411 551 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu6g00395 734 MobiDBLite consensus disorder prediction 61 80 - -
Lapu6g00395 734 Gene3D SET domain 414 725 IPR046341 -
Lapu6g00395 734 SUPERFAMILY SET domain 421 723 IPR046341 -
Lapu6g00395 734 MobiDBLite consensus disorder prediction 128 147 - -
Lapu6g00395 734 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Lapu6g00395 734 ProSiteProfiles SET domain profile. 567 700 IPR001214 GO:0005515
Lapu6g00395 734 SMART set_7 567 706 IPR001214 GO:0005515
Lapu6g00395 734 MobiDBLite consensus disorder prediction 101 195 - -
Lapu6g00395 734 Pfam SET domain 579 700 IPR001214 GO:0005515
Lapu6g00395 734 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 729 - -
Lapu6g00395 734 Pfam Pre-SET motif 415 559 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00395 Lapu-Chr6 3964789 3969967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00395 378 723 Su(var)3-9 homologs AT1G73100 30.028 4.53e-29 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu6g00395 Pre-SET 4.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00395 - - var:108323268 1186.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00395 6 3964789 3969967 Lapu6g00395 6 3964789 3969967 ECH
Lapu7g00792 7 9426077 9433606 Lapu6g00395 6 3964789 3969967 PCT