Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00392 ATGGAAGCACATCCTACTTTCTCTATTGAAAGATCAAACGCTAAGCAACACAATAACATGGGGATGTCTGAAGCATTTCCTTCATCATTGCCTGTCCTTCCAATGCCTCTAGAAGGGACATGCCCCAAATCATCCGATTCTCAGCCAGCATTTATGGAAAAAGAGCTTAAACCAAAACCTTTTACTCAATCAAATCATTTAACAACCAGCGGAGCAGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTCATGAAAAGCACCCTAGAAATACTCATTTTATTTCACGGTCATTGAGTAACTTGGCTTCACTGCCATTATCTTATTCTTCACATAGTGAACCAATACCTTCTACAACATCAACACCTTATTCCAATGGAAGCAGTGTTTCCTGGCAAACAGATTCCCTGTCTAGCTTTCTTGATTTCCCTGCCAATACCACAATTGATAATAGTCAAGTAGAAAGCAGTGCCTGCAATATTATGGCAACTGAAGAGTCTAAGAGAAATGATTGGCAGGAGTGGGCTGACCAGTTAATCAGTGATGATGATCCGTTGACTTCTAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCAAAGGCCTCAAATTCATCTTCGCAGCTTCCAATAGGACACCAATCCCAAAGCCATCAACAATTTACTGTTTCATCTGGAGAAAATCGTGTTGGTGTTGCCCCATCTTCATCAGCAAATTCGGTATCTTCCAAGCCACGGATGCGCTGGACACCTGAGCTCCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTTATGAAAGTTGAAGGATTAACTATATACCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCTGAGTCATCTGAAGGAGCTGCAGAAAAAAAACTAAGTCCAATTGAAGAGATGTCTTCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAACTTGAGATTCAAAGAAATCTACAGCTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGCAAATCTGGCATCGAAACATTTAAGGCATCATCGTCTGCCGTAGAGAGTCCATCTGGAGTTTCTTCTGAAGCCATGAAAGATTCTACAGCCAAAACTGATTCCGAAACCGTCAAAGTGGACCGGTGCGAGTCAGGACCCGATGAAGCTAATGGCAGTACCACTGTTGAGGAAAGCTCATCGAAAATGGATGAGAAGCAGGATCCTCCTGAAAGTAAAGCTTCTGAGAATCCTAAGCAACGTGGTAGTGAAGATAATCCTCAAGCCCCAAAGCGTCCAAGGAGTGAGGATTAA 1452 0.4249 MEAHPTFSIERSNAKQHNNMGMSEAFPSSLPVLPMPLEGTCPKSSDSQPAFMEKELKPKPFTQSNHLTTSGAVGHMFSSSPGYSTDLHHSSFSSHEKHPRNTHFISRSLSNLASLPLSYSSHSEPIPSTTSTPYSNGSSVSWQTDSLSSFLDFPANTTIDNSQVESSACNIMATEESKRNDWQEWADQLISDDDPLTSNWNDLLADNIQDLEPKASNSSSQLPIGHQSQSHQQFTVSSGENRVGVAPSSSANSVSSKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSSAVESPSGVSSEAMKDSTAKTDSETVKVDRCESGPDEANGSTTVEESSSKMDEKQDPPESKASENPKQRGSEDNPQAPKRPRSED* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00392 483 Gene3D - 256 315 - -
Lapu6g00392 483 Pfam Myb-like DNA-binding domain 259 310 IPR001005 -
Lapu6g00392 483 MobiDBLite consensus disorder prediction 213 259 - -
Lapu6g00392 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 314 IPR017930 -
Lapu6g00392 483 Pfam MYB-CC type transfactor, LHEQLE motif 342 389 IPR025756 -
Lapu6g00392 483 MobiDBLite consensus disorder prediction 396 483 - -
Lapu6g00392 483 MobiDBLite consensus disorder prediction 396 414 - -
Lapu6g00392 483 Coils Coil 345 365 - -
Lapu6g00392 483 NCBIfam myb-like DNA-binding domain, SHAQKYF class 257 311 IPR006447 GO:0003677
Lapu6g00392 483 FunFam Myb family transcription factor 256 314 - -
Lapu6g00392 483 SUPERFAMILY Homeodomain-like 255 311 IPR009057 -
Lapu6g00392 483 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 227 469 IPR044848 GO:0003700
Lapu6g00392 483 MobiDBLite consensus disorder prediction 445 483 - -
Lapu6g00392 483 MobiDBLite consensus disorder prediction 415 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00392 Lapu-Chr6 3935806 3944230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00392 1 431 G2-like Transcription Factor Family AT4G28610 48.753 1.70e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu6g00392 Myb_DNA-binding 9.1e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00392 6 3935806 3944230 Lapu6g00392 6 3935806 3944230 ECH