Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00391 ATGACAACTTTCCAAAAGATTCATGCTCTAGTCTTTCATATACTCTTCCTATCTTTGCTTCCATTGAGAATCGCTTCATCACCAAAAGCAGAAGCACAAGCCCTTGTCAAATGGAAAAACACTCTATCCCCTCCTCTTCCTCCTTCTCTAAACTCATGGTCCCTCGCCAACCTTCCCAACCTTTGCATTTGGGATGCCATTGTTTGTGACAATACCAACACAACTGTCTCTGAGATCAACTTGTCTGGTAGCAATCTTACTGGGACTCTCTCTGCCTTGGATTTTGCTTCCCTCCGTAACCTCACCCGATTCAACCTCAATGCCAACAATTTTGAGGGGTCAATACCATCAGCAATTGGCCATCTCTCCAAGCTCACACTATTGGACTTGGGGAACAACTTGTTAGATGACACACTGCCTTATGAGCTAGGCCGGCTAAGGGAGCTTCAATATCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGATCAAATTACTTCATAACTCCTCCTGACTGGTCCCAATATTCATGCATGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCATTATTGACTGGTGCATTCCCAAGTTTCGTACTGGAGTGCCATAACTTGACATACCTTGACATCTCTCAGGATGGATGGAATGGCACTATACCAGAATCCTTGTATAGCAATTTGGGCAAGCTCGAATACCTCAACCTAACCAACTGCAGTTTAGAAGGAAAACTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGCATAGGCCAACTTAGGGAGCTATGGCGTCTTGATCTCAGTCATAATTCTTTTAACTCTACAATCTCTTCTGAGCTTGGCCAGTGCACAAATCTGTCCTTCTTGAGTTTGGCAGTGAATCATTTGACTGGTCCTTTGCCTGTGTCATTAGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAATTCCTTTTCTGGTGAACTTTCTGCTTCAATCGTCTCTAATTGGACCCAGTTGACCTCCTTACAAATCCAAAACAACAATTTTACAGGAAAGGTTCCTCCGCATATTGGCCTGCTTAAAAAAATCAACTACCTATATCTGTACAATAACCACTTCTCTGGTCCCATTCCTGTTGAGATTGGAAACCTGAAGGAAATGACAGAGTTAGACCTTTCACAAAACCAGTTCTCTGGCCCAATTCCATCAACACTTTGGAGTCTGACAAACATTCAAGTCATTAATCTTTTCTTCAATGAGCTCTCTGGAACCATTCCCATGGATATTGGAAACTTAACCTCACTGCAAATCTTTGATGTCGACAACAACAACTTGTCTGGGGAGTTGCCATTAGCCATTGTTCAACTGACTGCTTTAAGCAAATTTTCTGTGTTCACCAATAACTTCACTGGAAGCATTCCCAGAGAATTTGGAAAGAGTAATCCTTTTTTGGCTCATGTCTACCTTTCAAACAACAGTTTCTCGGGAGAACTGCCTCCTGACTTATGTAGTGGTGGCAAGCTAACTATTTTGGCAGTTAATAATAACAGCTTCTCAGGGCCATTGCCAACGTCCTTGAGAAATTGTTCGTCGCTCATTAGAGTTCGGCTTGATGATAACCAGTTCACTGGAAACATCACAGACGCATTTGGGGTACTCCCAAATCTTGATTTTATTTCACTTAGTAGAAATCAGCTTGTTGGTGAGCTCTCCCCCGAGTGGGGTGAGTGTGCCAGCTTAACCAGTATGGATATGGGAAGCAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGTTGAATCAACTAGAGTATCTAAGCCTTCATTCCAATGATTTCACTGGCAGTATCCCACCTGAAATCGGAGATCTAAGCCTGCTTTTCAAGTTCGATTTGAGCAGTAACCATTTATCGGGAGAAATCCCCAAGAGTTATGGGAGATTGGCTCAGCTAAATCTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAAGAGCTTGGTGATTGTGATCGCTTACTGAGCCTGAATTTAAGCCATAACAATCTATCTGGGGAGCTTCCAAATGAATTTGGCAATCTGTTCTCACTCCAAATCATGTTGGACCTCAGCAGCAACTCTCTTTCAGGGCCTCTTCCCCAAAACCTTGAAAAGTTAACAACATTGGAGATTCTGAATGTGTCACACAACCATCTATCAGGGACAATCCCACGATCATATTCAAGCATGATCAGCCTTCAATCTATTGATTTTTCTTACAACAAATTGAGTGGTTCAATCCCCCCAGGTCGTGTTTTCCAGACAGCAACAGCTGAAGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAGATAAAAGGATTAACTTGCCCCGAATCTTTTTCCTCAGACAAATCCAGAGGAGTTAACAAAAAGGTTCTTCTTGGTGTTATCATACCAGTTTGTGCCTTAGTGATTGGGATAATTAGTGTTGGAGTAATACTTCGCCAGCGGCATGACAAAAAACACCTTGATGAAGAGAGCATTGAAAATGTTGATCTGCCTATTAGCCTGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCGATGACTTCAATGACAAGTACTGCATCGGAAAGGGGGGATTTGGAAGTGTTTATAGAGCACAATTACTCACAGGTCAAGTTGTTGCCGTTAAAAGACTAAACATGTTAGACTCTGCTGACATTCCAGCAGTGAACCGCCAGAGCTTTCAGAATGAGATAAAATCACTTACAGGAGTGAGACACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTACGAACATGTAGACAGAGGAAGTTTGGCAAAAGTGTTGTATGGAGAGGAAGGAGAATTGGAGCTAAGGTGGGCTGCAAGGCTGAAAATTGTTCAAGGAATAGCACATGCAATCTCATACCTGCACACCGATTGCTCCCCACCAATTGTGCACCGGGATGTAACACTGAATAACATACTACTGGACTCCGACTTAGAACCTCGCCTTGCAGATTTTGGCACAGCAAAGCTGCTGAGCTCAAACACTTCGACTTGGACCTCAGTTGCTGGATCCTACGGTTACATGGCTCCAGAACTAGCACAAAGCATGAGAGTGACAGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGTTGGAGATAATGATGGGAAAGCATCCTGGAGAAGTGTTGGGAACAGTGTATTCGAACAGGTATTTGTCACCAGGAGAGGAACCACAGGTGCTATTGAAGGACATGCTGGACCAAAGGCTTCCACCTCCAACAGGGCAATTAGCAGAAGCAGTAGTGTTCACAATGACCGTAGCTTTGGCATGCACACGTGCGGCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCACAAGAGCTATCGGCTACTACTCAGCCTTATCTTTCCGAGCCATTTGGCATGATAACCATCAACAAACTTACAGGGTTCCAGAAATAG 3570 0.4328 MTTFQKIHALVFHILFLSLLPLRIASSPKAEAQALVKWKNTLSPPLPPSLNSWSLANLPNLCIWDAIVCDNTNTTVSEINLSGSNLTGTLSALDFASLRNLTRFNLNANNFEGSIPSAIGHLSKLTLLDLGNNLLDDTLPYELGRLRELQYLSLYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPDWSQYSCMPSLTRLALHLNPLLTGAFPSFVLECHNLTYLDISQDGWNGTIPESLYSNLGKLEYLNLTNCSLEGKLSPNLSMLSNLKELRIGQLRELWRLDLSHNSFNSTISSELGQCTNLSFLSLAVNHLTGPLPVSLANLTKISELGLSDNSFSGELSASIVSNWTQLTSLQIQNNNFTGKVPPHIGLLKKINYLYLYNNHFSGPIPVEIGNLKEMTELDLSQNQFSGPIPSTLWSLTNIQVINLFFNELSGTIPMDIGNLTSLQIFDVDNNNLSGELPLAIVQLTALSKFSVFTNNFTGSIPREFGKSNPFLAHVYLSNNSFSGELPPDLCSGGKLTILAVNNNSFSGPLPTSLRNCSSLIRVRLDDNQFTGNITDAFGVLPNLDFISLSRNQLVGELSPEWGECASLTSMDMGSNKLSGKIPSALSKLNQLEYLSLHSNDFTGSIPPEIGDLSLLFKFDLSSNHLSGEIPKSYGRLAQLNLLDLSNNNFSGSIPKELGDCDRLLSLNLSHNNLSGELPNEFGNLFSLQIMLDLSSNSLSGPLPQNLEKLTTLEILNVSHNHLSGTIPRSYSSMISLQSIDFSYNKLSGSIPPGRVFQTATAEAYVGNSGLCGEIKGLTCPESFSSDKSRGVNKKVLLGVIIPVCALVIGIISVGVILRQRHDKKHLDEESIENVDLPISLVWGRDGKFTFSDLVKATDDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNMLDSADIPAVNRQSFQNEIKSLTGVRHRNIIKLYGFCSCRGQMFLVYEHVDRGSLAKVLYGEEGELELRWAARLKIVQGIAHAISYLHTDCSPPIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQSMRVTEKCDVYSFGVVVLEIMMGKHPGEVLGTVYSNRYLSPGEEPQVLLKDMLDQRLPPPTGQLAEAVVFTMTVALACTRAAPESRPIMRAVAQELSATTQPYLSEPFGMITINKLTGFQK* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00391 1189 Gene3D Transferase(Phosphotransferase) domain 1 971 1174 - -
Lapu6g00391 1189 CDD STKc_IRAK 896 1164 - -
Lapu6g00391 1189 FunFam Leucine-rich repeat receptor protein kinase MSP1 851 970 - -
Lapu6g00391 1189 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 522 813 - -
Lapu6g00391 1189 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1016 1028 IPR008266 GO:0004672|GO:0006468
Lapu6g00391 1189 Pfam Protein kinase domain 892 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00391 1189 PANTHER LEUCINE RICH REPEAT KINASE 2 446 1168 - -
Lapu6g00391 1189 SUPERFAMILY Protein kinase-like (PK-like) 875 1164 IPR011009 -
Lapu6g00391 1189 Gene3D Ribonuclease Inhibitor 278 350 IPR032675 -
Lapu6g00391 1189 Gene3D Ribonuclease Inhibitor 351 471 IPR032675 -
Lapu6g00391 1189 SUPERFAMILY L domain-like 500 789 - -
Lapu6g00391 1189 Gene3D Ribonuclease Inhibitor 210 277 IPR032675 -
Lapu6g00391 1189 Gene3D Ribonuclease Inhibitor 28 209 IPR032675 -
Lapu6g00391 1189 Pfam Leucine rich repeat N-terminal domain 29 70 IPR013210 -
Lapu6g00391 1189 ProSiteProfiles Protein kinase domain profile. 890 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00391 1189 SUPERFAMILY L domain-like 280 495 - -
Lapu6g00391 1189 Gene3D Ribonuclease Inhibitor 483 810 IPR032675 -
Lapu6g00391 1189 SMART LRR_typ_2 570 594 IPR003591 -
Lapu6g00391 1189 SMART LRR_typ_2 763 788 IPR003591 -
Lapu6g00391 1189 SMART LRR_typ_2 122 146 IPR003591 -
Lapu6g00391 1189 SMART LRR_typ_2 449 473 IPR003591 -
Lapu6g00391 1189 SMART LRR_typ_2 666 690 IPR003591 -
Lapu6g00391 1189 SMART LRR_typ_2 280 304 IPR003591 -
Lapu6g00391 1189 SMART LRR_typ_2 739 762 IPR003591 -
Lapu6g00391 1189 SMART LRR_typ_2 618 642 IPR003591 -
Lapu6g00391 1189 SMART LRR_typ_2 98 121 IPR003591 -
Lapu6g00391 1189 SMART LRR_typ_2 401 425 IPR003591 -
Lapu6g00391 1189 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Lapu6g00391 1189 Pfam Leucine Rich Repeat 693 714 IPR001611 GO:0005515
Lapu6g00391 1189 Pfam Leucine Rich Repeat 247 267 IPR001611 GO:0005515
Lapu6g00391 1189 ProSitePatterns Protein kinases ATP-binding region signature. 896 918 IPR017441 GO:0005524
Lapu6g00391 1189 FunFam MDIS1-interacting receptor like kinase 2 971 1170 - -
Lapu6g00391 1189 SUPERFAMILY L domain-like 44 368 - -
Lapu6g00391 1189 FunFam Leucine Rich Repeat family protein, expressed 190 279 - -
Lapu6g00391 1189 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 280 521 - -
Lapu6g00391 1189 Gene3D Phosphorylase Kinase; domain 1 851 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00391 Lapu-Chr6 3931225 3935204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00391 25 660 Receptor kinase-like Gene Family AT4G08850 32.719 3.17e-79 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lapu6g00391 Pkinase 8.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00391 - - pvu:PHAVU_001G163700g 1921.75