Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00390 ATGACTACTTTTCAAAAGGATCATGCTCTAGTCTTTCATATACTCTTCCTATCTTTGCTTCCATTGAAAATCGCTTCATCACCAAGAGCAGAAGCAGAAGCCCTTGTCAAATGGAAAACCACTCTATCCCCTCCTCTTCCTCCTTCTCTAAACTCATGGTCCCTCTCCAACCTTTCCAGCCTTTGCATTTGGGATGCCATTGTTTGTGACAGCACCAACACAACTGTCTCAGAGATAAACTTGTCTGGTGCCAATATCACTGGGACTATCACTGTCTTGGATTTTGCTTCCCTCCCTAACCTCACCCGACTCAACCTCGATGCCAACAATTTTGAGGGGTCAATACCATCAGCAATTGGTAACCTCTCCAAGCTCACGCTATTGGACTTGGGGAACAACTTATTTGAACACACACTGCCTTATGAGCTTGGCCAGCTAAGGGAGCTTCAATATCTCAGCCTTTTCAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGATCAAATTACTTTATAACTCCTCCTGACTGGTCCCAATATTCATGCATGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCATCATTGACTGGTCAATTCCCAAGTTTCATACTGGAGTGTCATAACTTGACATACCTTGACATCTCTCAGAATGGATGGAATGGCCCTATACCAGAATCCTTGTATAGCAATTTGGGCAAGCTCGAATACCTCAACCTCACCAACTGTGGGTTAGAAGGAAAACTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGACCTTCGTATCGGTAATAACATGTTTAATTGTTCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAATTAAATAACATTTCCGCCTATGGGAAAATTCCTTCTTCTTTAGGACAACTTAAGGAGCTATGGCGTCTTGATCTCAGTCATAATTCTTTTAACTCTACAATCTCTTCTGAGCTTGGTCAGTGCACAAATCTATCCTTCTTGAGTTTAGCAGTGAATCATTTGACTGGTCCTTTGCCTGTGTCGTTAGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAATTCCTTTTCTGGTGAACTTTCTGCTTCACTCATCTCTAATTGGACCCAGTTGACCTCCTTGCAAATCCAAAACAACAATTTTACAGGAAAGGTTCCTCCGCATATTGGCCTGCTTAAAAAAATCAACTACCTATATCTGTACAATAACCACTTCTCTGGTCCCATTCCTGTTGGGATTGGAAACCTGAAGGAAATGACAGAATTAGACCTTTCACAAAACCAATTCTCTGGCCCAATTCCATCAACACTTTGGAATCTGACGAACATTCAAGTCATTAATCTTTTCTTCAATGAGCTCTCTGGAACCATTCCCATGGATATTGGAAACTTAACCTCACTGCAAATCTTTGATGTCGACAACAATAACTTGTACGGGGAGTTGCCAGAGGCCATTGTGCAACTAACTGCTTTAAGTAATTTTTCTGTGTTCACCAATAACTTCACTGGCAGCATTCCCAGAGAATTTGGAAAGAGTAATCCTTCTTTGACTCATGTCTACCTTTCAAACAACAGTTTTTCGGGAGAACTGCCTCCTGACTTATGTAATGGTGGCAAGCTAACTATTTTGGCAGTCAATAATAACAGCTTCTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCGTCGCTCGTAAGAGTTCGGCTTGATGATAACCAGTTCACTGGAAACATCACAGACGCATTTGGGGTACTCCCAAATCTTGATTTTATTTCACTTAGTAGAAATCAGCTTGTTGGTGAGCTCTCCCCCGAGTGGGGTGAGTGTGCCAACTTAACCCGTATGGATATGGAAAGCAACAAACTTTCTGGTAAAATTCCTTCTGCGTTAAGTAAGTTGAGTAGATTAGAGTATCTAAGCCTTCATTCCAATGATTTCACTGGCAGTATCCCACCTGAAATCGGAAATCTAAGACTGCTTTTCAGGTTCAATTTGAGCAGTAACCATTTATCAGGAGACATCCCAAAGAATTATGGGAGATTGGCTCAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAAGAGCTTGGTGATTGTGGTCGCCTACTGAGCCTGAATTTAAGCCACAACAATCTATCAGGAGAGATACCAAATGAACTTGGCAATCTGTTCTCACTCCAAATCATGTTGGACCTCAGCAGCAACTCTCTTTCAGGGGCTCTTCCCCAAAACCTTGAAAAGTTAACAACACTGGAGATTCTCAATGTGTCACACAACCATCTATCAGGGACAATCCCACGATCATATTCAAGCATGGTCAGCCTTCAATCCGTTGATTTTTCTTACAACAAATTGAGTGGTTCAATCCCCCCAGGTCGTGTTTTCCAGACAGCAACAGCTGAAGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAGATAAAAGGATTAACTTGTCCCGAATCCTTTTCCCCAGACAAATCCGGAGGAGTTAACAAAAAGGTTCTTCTTGGTGTTATCATACCAGTTTGTGTCTTATTGATTGGGATAATTAGTATTGGAGTAATACTTCGCCAGCGGCATGACAAAAAACACCTTGATGAAAAGAGCATTGAAAATGGTGATCTGCCTATTAGCCTGGTGTGGGGAAGAGATGGACAATTCACATTTTCTGATCTTGTTAAGGCCACCGATGACTTCAATGACAAGTACTGCATCGGAAAGGGAGGATTTGGAAGTGTTTATAGAGCACAATTACTCACAGGTCAAGTTGTTGCCGTTAAAAGACTAAACATGTTAGACTCTGCTGACATTCCAGCAGTGAACCGCCAGAGCTTTCAGAATGAGATAAAATCACTTACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTACGAACATATAGACAGAGGAAGTTTGGCAAAAGTGTTGTATGGAGAGGAAGGAGAATTGGAGCTAAGGTGGGCTACAAGGCTGAAAATTGTTCAAGGAATAGCGCATGCAATCTCATACCTGCACACCGATTGCTCCCCACCAATTGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTCCGACTTAGAACCTCGCCTTGCAGATTTTGGCACAGCAAAGCTGCTGAGCTCAAACACTTCAACTTGGACCTCAGTTGCTGGATCCTACGGTTACATGGCTCCAGAACTAGCACAAAGCATGAGAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGTTGGAGATAATGATGGGAAAGCATCCTGGAGAAGTGTTGGGAACAGTGTATTCGAAGAGGTATTTGTCAGCAAGAGAGGAACCACAGGTGCTATTGAAGGACGTGCTGGACCAAAGGCTTCCACCTCCAACAGGGCAATTAGCAGAAGCAGTAGTGTTCACAATGACCGTAGCTTTGGCATGCACACGTGCGGCTCCAGAGTTCAGACCCATCATGCGTGCTGTGGCACAAGAACTATCGGCTACTACTCAGCCTTATCTTTCCGAGCCATTTGGCATGATAACCATCAACAAACTTTCAGGGTTCCAGAAATAG 3681 0.4273 MTTFQKDHALVFHILFLSLLPLKIASSPRAEAEALVKWKTTLSPPLPPSLNSWSLSNLSSLCIWDAIVCDSTNTTVSEINLSGANITGTITVLDFASLPNLTRLNLDANNFEGSIPSAIGNLSKLTLLDLGNNLFEHTLPYELGQLRELQYLSLFNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPDWSQYSCMPSLTRLALHLNPSLTGQFPSFILECHNLTYLDISQNGWNGPIPESLYSNLGKLEYLNLTNCGLEGKLSPNLSMLSNLKDLRIGNNMFNCSVPTEIGLISGLQILELNNISAYGKIPSSLGQLKELWRLDLSHNSFNSTISSELGQCTNLSFLSLAVNHLTGPLPVSLANLTKISELGLSDNSFSGELSASLISNWTQLTSLQIQNNNFTGKVPPHIGLLKKINYLYLYNNHFSGPIPVGIGNLKEMTELDLSQNQFSGPIPSTLWNLTNIQVINLFFNELSGTIPMDIGNLTSLQIFDVDNNNLYGELPEAIVQLTALSNFSVFTNNFTGSIPREFGKSNPSLTHVYLSNNSFSGELPPDLCNGGKLTILAVNNNSFSGPLPKSLRNCSSLVRVRLDDNQFTGNITDAFGVLPNLDFISLSRNQLVGELSPEWGECANLTRMDMESNKLSGKIPSALSKLSRLEYLSLHSNDFTGSIPPEIGNLRLLFRFNLSSNHLSGDIPKNYGRLAQLNFLDLSNNNFSGSIPKELGDCGRLLSLNLSHNNLSGEIPNELGNLFSLQIMLDLSSNSLSGALPQNLEKLTTLEILNVSHNHLSGTIPRSYSSMVSLQSVDFSYNKLSGSIPPGRVFQTATAEAYVGNSGLCGEIKGLTCPESFSPDKSGGVNKKVLLGVIIPVCVLLIGIISIGVILRQRHDKKHLDEKSIENGDLPISLVWGRDGQFTFSDLVKATDDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNMLDSADIPAVNRQSFQNEIKSLTGVRHRNIIKLYGFCSCRGQMFLVYEHIDRGSLAKVLYGEEGELELRWATRLKIVQGIAHAISYLHTDCSPPIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQSMRVTEKCDVYSFGVVVLEIMMGKHPGEVLGTVYSKRYLSAREEPQVLLKDVLDQRLPPPTGQLAEAVVFTMTVALACTRAAPEFRPIMRAVAQELSATTQPYLSEPFGMITINKLSGFQK* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00390 1226 Pfam Leucine Rich Repeat 247 267 IPR001611 GO:0005515
Lapu6g00390 1226 FunFam MDIS1-interacting receptor like kinase 2 1008 1207 - -
Lapu6g00390 1226 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Lapu6g00390 1226 SUPERFAMILY L domain-like 45 380 - -
Lapu6g00390 1226 FunFam Leucine Rich Repeat family protein, expressed 190 286 - -
Lapu6g00390 1226 FunFam Leucine-rich repeat receptor protein kinase MSP1 888 1007 - -
Lapu6g00390 1226 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Lapu6g00390 1226 Gene3D Ribonuclease Inhibitor 189 287 IPR032675 -
Lapu6g00390 1226 Gene3D Ribonuclease Inhibitor 288 384 IPR032675 -
Lapu6g00390 1226 ProSiteProfiles Protein kinase domain profile. 927 1209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00390 1226 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 658 1201 - -
Lapu6g00390 1226 SUPERFAMILY RNI-like 287 620 - -
Lapu6g00390 1226 Gene3D Transferase(Phosphotransferase) domain 1 1008 1211 - -
Lapu6g00390 1226 Gene3D Ribonuclease Inhibitor 510 848 IPR032675 -
Lapu6g00390 1226 SUPERFAMILY Protein kinase-like (PK-like) 909 1201 IPR011009 -
Lapu6g00390 1226 Gene3D Phosphorylase Kinase; domain 1 888 1007 - -
Lapu6g00390 1226 Pfam Protein kinase domain 929 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00390 1226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1053 1065 IPR008266 GO:0004672|GO:0006468
Lapu6g00390 1226 FunFam MDIS1-interacting receptor like kinase 2 370 534 - -
Lapu6g00390 1226 CDD STKc_IRAK 933 1201 - -
Lapu6g00390 1226 SMART LRR_typ_2 536 559 IPR003591 -
Lapu6g00390 1226 SMART LRR_typ_2 655 679 IPR003591 -
Lapu6g00390 1226 SMART LRR_typ_2 486 510 IPR003591 -
Lapu6g00390 1226 SMART LRR_typ_2 317 341 IPR003591 -
Lapu6g00390 1226 SMART LRR_typ_2 703 727 IPR003591 -
Lapu6g00390 1226 SMART LRR_typ_2 122 146 IPR003591 -
Lapu6g00390 1226 SMART LRR_typ_2 98 121 IPR003591 -
Lapu6g00390 1226 SMART LRR_typ_2 607 631 IPR003591 -
Lapu6g00390 1226 SMART LRR_typ_2 438 462 IPR003591 -
Lapu6g00390 1226 SMART LRR_typ_2 800 825 IPR003591 -
Lapu6g00390 1226 SMART LRR_typ_2 776 799 IPR003591 -
Lapu6g00390 1226 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 535 850 - -
Lapu6g00390 1226 ProSitePatterns Protein kinases ATP-binding region signature. 933 955 IPR017441 GO:0005524
Lapu6g00390 1226 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
Lapu6g00390 1226 SUPERFAMILY L domain-like 535 826 - -
Lapu6g00390 1226 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Lapu6g00390 1226 Gene3D Ribonuclease Inhibitor 385 509 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00390 Lapu-Chr6 3918273 3922285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00390 25 699 Receptor kinase-like Gene Family AT4G08850 33.826 2.08e-86 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lapu6g00390 Pkinase 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00390 - - pvu:PHAVU_001G163700g 2037.31