Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00386 ATGGACGATTCCGCAAAATCCACTGTCGGTAAAACCAAACTCCTCAATCCATGGATGCTTCACTTCCAGAAACTCGCACTTGAACTCAAGTGTCCTCTCTGTTTGGGTTTGTTCAAGAGACCTGTGTTACTTCCATGCAACCACTTGTTTTGCGATTCATGCTTAGCTGATTGTATAACAGCTGGTTCTGAATGTGCTGTTTGTAATGCAAAGTATTCTCAAACAGATGTAAGGCACGTGCCTTTTGTGGAAAATGTGGTAGCAATATATAGAAGCTTGGATGCCACCTTTTGTGCTAGTTTGTTTCAGCAACGTTCTTCTGGTGATGAGAGGGTTTTGGAGCCATGCCAGGCAATTCTTAATTCAACTTCTAGTAGTATAAAAGCTGGCAAGCTTCCTCAGAATTTGCCTAATATGAACAAGGTTGGGGTTGGCAAGAATCTCAAATCCAAGATTGCTGTGCATGATAAAGCAGATGAGCTTGAGTTGTCTCGTGGGAGAGGGAAGCCTAATCTGATGCAATCTACGCAGATGGAAATGGATGTGAATCAAGTGACACAATCAGCCCCAGATAGCCCTCCTTTTTGTGATACCAAAGGTTCAGATAATGACTTCAGTGATCAAGACAGTGAGCATCCATTACCTCTTGATAGACTGGGAAATTCTTCATTAAAGAGAGCTAGTACAGGAAATGGAAATTTGAGGGAGAAAATGGGACAATTAAGGTCAGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGAAAGGGATCCCAAGAGACATAAAATTCTTGAACTTAAATCTGGAAAGGACCTCGGTGATCAATTGCCCACAGATGCTTTGAATGACTTTCCTCCAACTAGAAGCATCTGTTCATTTTGCCAATCTTCTAAAACCTCTGAGGCTACTGGGCCAATGCTGCATTATGCTAATGGAAACTTAGTTACAGGAGATGCAGCAATGAAGCCAAATGTTATACCTGTGCATAGAATTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGATGAAGTGGTTAAGAATTTGAAGGCAGAATTGGCAAGGGGAGTGAAGCTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGCTGCTATGTCAAATCATGTAGAAGAACTTATCATGTTCCTTGTGCACTGGACATCTCAACTTGTCGTTGGGATCATGAGGATTTTCTTTTGCTCTGTCCCCTCCATTCAAATGTCAAATTTCCATGTGAGAAATCCAGGTCTAAGAAACAGGCAACTCGGAAGCCTCCCAATTTGTCTGAACTGCCATCTCACCAATCAAATACACTTGAAGCTTCACAGGATGATTGTAGAAAGCTTGTTTTCTGTGGATCTGCTTTATCAAGTGAAGAAAAAATACTTTTGATTAATTATGCAAGCAAGGCTGGTGCAACCGTGACAAAATTTTGGACCTCAGATGTTACACATGTAATAGCGTCGACGGATGCAAATGGAGCATGCTCCAGGACATTGAAAGTTCTCATGGCTATTCTAAATGGACGATGGGTTCTAAAATTGGATTGGATAAAAGCGTGCATGGAAGAGAACAATCCTGTAGAAGAAGAACCATATGAAATTAGTGTCGACAACCAAGGGTGCCAAGGTGGCCCAAGAACTGGCAGACTTAGGGCATTGACCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGGGATTACGTGTCAACTTATAAGGAAGATCTTGAAGAATTAATTGAAGTGGGTGGAGGTACTGTTTTGAGAAGCAAGGAAGAATTGGAAGTGCAAAGACATGAATGCAAAGTGAATTCTTCAAAGCTGCTGGTTGTTTACAACCTTGATCCCCCGCAAGGATGCAAATTAGGGGAAGAAGTATCAATTCTTTGGCAAAGGCTAAATGACGCCGAGGATTTAGCAGCTAATACTTTACAAGTGATTGGCCACACGTGGATTCTTGAATCAATTGCTGCTTGTAAATTGCAGCCTTTTGTTAACTAA 2016 0.4147 MDDSAKSTVGKTKLLNPWMLHFQKLALELKCPLCLGLFKRPVLLPCNHLFCDSCLADCITAGSECAVCNAKYSQTDVRHVPFVENVVAIYRSLDATFCASLFQQRSSGDERVLEPCQAILNSTSSSIKAGKLPQNLPNMNKVGVGKNLKSKIAVHDKADELELSRGRGKPNLMQSTQMEMDVNQVTQSAPDSPPFCDTKGSDNDFSDQDSEHPLPLDRLGNSSLKRASTGNGNLREKMGQLRSESSASETEGLERDPKRHKILELKSGKDLGDQLPTDALNDFPPTRSICSFCQSSKTSEATGPMLHYANGNLVTGDAAMKPNVIPVHRICIDWAPQVYFVDEVVKNLKAELARGVKLKCSKCNLKGAALGCYVKSCRRTYHVPCALDISTCRWDHEDFLLLCPLHSNVKFPCEKSRSKKQATRKPPNLSELPSHQSNTLEASQDDCRKLVFCGSALSSEEKILLINYASKAGATVTKFWTSDVTHVIASTDANGACSRTLKVLMAILNGRWVLKLDWIKACMEENNPVEEEPYEISVDNQGCQGGPRTGRLRALTNEPKLFSGLKFYFSGDYVSTYKEDLEELIEVGGGTVLRSKEELEVQRHECKVNSSKLLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00386 671 Gene3D BRCT domain 559 664 IPR036420 -
Lapu6g00386 671 MobiDBLite consensus disorder prediction 416 440 - -
Lapu6g00386 671 FunFam Breast cancer associated RING 1 285 409 - -
Lapu6g00386 671 Pfam BRCT domain, a BRCA1 C-terminus domain 559 668 IPR001357 -
Lapu6g00386 671 FunFam Breast cancer associated RING 1 16 101 - -
Lapu6g00386 671 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Lapu6g00386 671 ProSiteProfiles BRCT domain profile. 450 536 IPR001357 -
Lapu6g00386 671 SMART BRCT_7 559 664 IPR001357 -
Lapu6g00386 671 SMART BRCT_7 444 526 IPR001357 -
Lapu6g00386 671 FunFam Breast cancer type 1 susceptibility protein homolog 447 553 - -
Lapu6g00386 671 CDD BRCT_Bard1_rpt1 450 523 - -
Lapu6g00386 671 SUPERFAMILY RING/U-box 28 91 - -
Lapu6g00386 671 Pfam Zinc finger, C3HC4 type (RING finger) 28 74 - -
Lapu6g00386 671 Gene3D BRCT domain 447 552 IPR036420 -
Lapu6g00386 671 Pfam PHD-like zinc-binding domain 328 407 - -
Lapu6g00386 671 MobiDBLite consensus disorder prediction 423 440 - -
Lapu6g00386 671 SUPERFAMILY BRCT domain 561 669 IPR036420 -
Lapu6g00386 671 CDD ePHD 327 406 - -
Lapu6g00386 671 ProSiteProfiles Zinc finger RING-type profile. 31 69 IPR001841 -
Lapu6g00386 671 Pfam BRCA1 C Terminus (BRCT) domain 451 523 IPR001357 -
Lapu6g00386 671 CDD RING-HC_AtBARD1-like 25 78 - -
Lapu6g00386 671 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 12 237 IPR031099 GO:0006281|GO:0006974
Lapu6g00386 671 MobiDBLite consensus disorder prediction 183 260 - -
Lapu6g00386 671 ProSiteProfiles BRCT domain profile. 557 671 IPR001357 -
Lapu6g00386 671 MobiDBLite consensus disorder prediction 222 247 - -
Lapu6g00386 671 ProSiteProfiles Extended PHD (ePHD) domain profile. 287 407 IPR034732 -
Lapu6g00386 671 SUPERFAMILY BRCT domain 450 537 IPR036420 -
Lapu6g00386 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 101 IPR013083 -
Lapu6g00386 671 FunFam BRCA1-associated RING domain protein 1 559 664 - -
Lapu6g00386 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 409 IPR013083 -
Lapu6g00386 671 SMART ring_2 360 406 IPR001841 -
Lapu6g00386 671 SMART ring_2 31 68 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00386 Lapu-Chr6 3892523 3898289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00386 480 593 Core DNA Replication Machinery Family AT4G02110 30.833 6.12e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00386 K10683 - gmx:100784883 1157.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00386 6 3892523 3898289 Lapu6g00386 6 3892523 3898289 ECH