Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00383 ATGGGGAGTAGGGTTAAGCAGGGGAGAAGATTGCAGAAGATGATGAAGTGTCTGCGTGTGAGGGAGCCGGTGAAAGGAGAAGAGGAAACGGTTCCTTCCTCGGAATCTCTTGCAATCAGGGAATTTTATTCTTCAACAGCGAGTGGGCGTTCTGGCCTCGATGTAGAAATTGAGATGTTGGGGTCTGATTCTGGTAACATAGACGAAACTGAATTGTCTTTGCGTGAGAGTGGCATCTTGGACAATGAGGAAGCAAGTGCTTTGTTAGGAAGAAATGAATATCATAAAGGGAATATAGAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCTGTGACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACGCCCCAAAAAACATTCCTACTATTATGCTACTCCCCCAATGTCCATATACACGGCTGGATTACTGTTGGAAGCAATTTTCCTAAAAGCGAAATGCTTGCAGGTTCTAGGGAGGTTTAAAGAAGCTGCCCAAACTTGTAAAGTTATTCTGGACACAATTGAGTCTTCATTGCCTGAAGGCTTGCCTCAAAACTTCTGCGATGAGGGTAAATTGCGGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCAGAATTGTGGAAACTTGCTGATTCTCCCCGTGATGTTATTTTGTCTTACCGGCGTGCACTCCTTCACCAATGGAATCTTGATTCAAAAACCATAGCAAGGATTCAGAAAGAATTTGTTGTTTTTCTTCTGTATAGTGGAGGGGAAGCAATCCCCTCGAATCTTCGTTCCCATATGGACAGCTCTTTTGTACCTAGAAATAACTTAGAAGAGGCTATACTCCTTTTAATGATTTTGCTAAGAAAAATTTCTCTTAATAAACTTGAGTGGGATCCGTCAATTTTGGACCATCTCGCATTTGCTCTATCTGTTTCAGGGGATTTGACAGCTTTAGCCAAGCAATGGGAAGAATTACTCCCTGGGACTATCAATCGTAGAGAAAGGTACCATGCCTTATCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCATTGAATCTTCTTAGGAAATTGTTGAGTAAAGAGGACCCAAAACATGTTCCTTCTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAACCCTGATCTTGCAAAAGATGGGGCAAGCTTAGCTCGTAGAGTGCTTGAGAACTTGAATGGAAGATGTGATCAGTTGGAAGGTCTTTCCAGTTGCTTACTTGGTGTTTCACTTTCAACACACTCAAAATTTGCTATTTCTAATTCTGAGAGGGTTGAGAGACAATCTGAGGCACTTCATTCTCTGGAAACTGCACTCAAAGTGACCGGAATGAGTAACCCCCTTGTATTATACTGTTTGAGTTTAGAATGTGCGGAGCAAAGGAAGTTGGATGCTGCACTTCATTATGCAAAATGCTTTCTAAACTTGGAAGCTGGGTCTAGTGTTAAAGGGTGGTTATTATTAGCCAGGATACTATCAGCTCAAAAACAGTTTTTGGATGCCGAATCTATTCTCAATGAGGCCTTGGATCAGACTGGAATATGGGATCAAGGAGAGTTACTGCGAACAAAAGCTAAACTACAAGTTGCGCAGGACCAGTTGAAGAATGCCATTGAAACATATAGTCGGCTTCTTGCTATTCTCCTAGTTCAGAGAAAAACGTTTGGTTCAAGGAAGACGATATATAAGGACTACATAGATCATGCTAGGAACATGGAAATAGAAATATGGCATGATCTTGCTTATGTGTACATAAGTCTGTCACGTTGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTACAATGTACGAAGCAAAGGGCGTTCACAGAGAGGCTTTAAAAGCTTTTCGTGATGCTTTAGATATAGATCCCGGACATGTCCCTAGCTTGGTCTCTACTGCGATAGTTCTTAGACGGTGCAGTAATCGGTCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCACTAAGGCATGACAGATATGATGCTTCTGCATGGTATAATCTTGGCATTTTTCACAAGGACGAGGGTACGATGCTAGAAGCTGCAGAATGTTTTGAGACAGCGAGCTTTCTTGAAGAATCGGCTCCAGTTGAACCTTTCAGATGA 2181 0.4182 MGSRVKQGRRLQKMMKCLRVREPVKGEEETVPSSESLAIREFYSSTASGRSGLDVEIEMLGSDSGNIDETELSLRESGILDNEEASALLGRNEYHKGNIEAALRVYEKINIGAVTSKMKISLAKSRERPKKHSYYYATPPMSIYTAGLLLEAIFLKAKCLQVLGRFKEAAQTCKVILDTIESSLPEGLPQNFCDEGKLRETLSKVVELLPELWKLADSPRDVILSYRRALLHQWNLDSKTIARIQKEFVVFLLYSGGEAIPSNLRSHMDSSFVPRNNLEEAILLLMILLRKISLNKLEWDPSILDHLAFALSVSGDLTALAKQWEELLPGTINRRERYHALSLCYYGAGKDLVALNLLRKLLSKEDPKHVPSLLMASKICCENPDLAKDGASLARRVLENLNGRCDQLEGLSSCLLGVSLSTHSKFAISNSERVERQSEALHSLETALKVTGMSNPLVLYCLSLECAEQRKLDAALHYAKCFLNLEAGSSVKGWLLLARILSAQKQFLDAESILNEALDQTGIWDQGELLRTKAKLQVAQDQLKNAIETYSRLLAILLVQRKTFGSRKTIYKDYIDHARNMEIEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGTMYEAKGVHREALKAFRDALDIDPGHVPSLVSTAIVLRRCSNRSNPAIRSFLMDALRHDRYDASAWYNLGIFHKDEGTMLEAAECFETASFLEESAPVEPFR* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00383 726 SUPERFAMILY TPR-like 151 364 IPR011990 GO:0005515
Lapu6g00383 726 ProSiteProfiles TPR repeat profile. 687 720 IPR019734 GO:0005515
Lapu6g00383 726 SUPERFAMILY TPR-like 528 713 IPR011990 GO:0005515
Lapu6g00383 726 SUPERFAMILY TPR-like 435 556 IPR011990 GO:0005515
Lapu6g00383 726 Gene3D Tetratricopeptide repeat domain 560 721 IPR011990 GO:0005515
Lapu6g00383 726 Gene3D Tetratricopeptide repeat domain 419 559 IPR011990 GO:0005515
Lapu6g00383 726 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Lapu6g00383 726 Pfam Tetratricopeptide repeat 618 649 IPR019734 GO:0005515
Lapu6g00383 726 Gene3D Tetratricopeptide repeat domain 81 402 IPR011990 GO:0005515
Lapu6g00383 726 SMART tpr_5 687 720 IPR019734 GO:0005515
Lapu6g00383 726 SMART tpr_5 527 560 IPR019734 GO:0005515
Lapu6g00383 726 SMART tpr_5 150 183 IPR019734 GO:0005515
Lapu6g00383 726 SMART tpr_5 583 616 IPR019734 GO:0005515
Lapu6g00383 726 SMART tpr_5 617 650 IPR019734 GO:0005515
Lapu6g00383 726 SMART tpr_5 491 524 IPR019734 GO:0005515
Lapu6g00383 726 Coils Coil 529 549 - -
Lapu6g00383 726 PANTHER PROTEIN NPG1 15 726 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00383 Lapu-Chr6 3858138 3863638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00383 15 726 Calmodulin-binding Proteins AT4G28600 55.021 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00383 K21843 - gmx:100784353 1239.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00383 6 3858138 3863638 Lapu6g00383 6 3858138 3863638 ECH
Lapu7g00785 7 9351897 9357741 Lapu6g00383 6 3858138 3863638 PCT