Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00378 ATGGATTCTGCAAGAAGTTGGTTACAGAAATTTCAACCACGAGATAAATTAAGAGCCCCTACTAGAAAAAAAGATGACACTCATGGTGGAAACGAAGCTCCAAACGTGCCTATGGACGAAGCAACTCTTTCCAATATCACAAAGCAGAAGGTTGCAGCAGCTAAACAATACATTGAAAACCACTATAAGGAACAAATGAAGAGCCTTCAGGAAAGGAAAGAACGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTATCCGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTTCAAAGACACAAGATGGGTGTTGATGATTTTGAGTTGTTGACCATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTTTGTAAGGAAAAGACTACGGATCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTCCAAGATGATGAGTATTTATATCTTATTATGGAGTATCTACCTGGTGGGGATATGATGACTCTACTCATGAGAAAGGATACCTTGACCGAAGATGAAGCCAGATTTTATGTGGGAGAAACAGTTCTAGCTATTGAATCAATACATAAACACAATTATATACATAGGGATATTAAGCCGGATAACTTATTACTTGATAAATATGGACACTTGAGACTGTCAGATTTTGGATTATGTAAACCCTTAGACTGTAGTACACTTGAAGAAACAGATTTCTCTACTGGTAATAATACAAATGGAGTAACACAAAATGATGAATCTGGACGCACACAACAAGAACAATTACAACACTGGCAGAAAAATAGGAGGACACTTGCTTATTCTACTGTTGGTACACCAGACTATATTGCTCCAGAAGTTTTATTAAAGAAAGGCTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAATTGGAAATCTCATTTAAAATTTCCTGAAGAAGCAAGGTTAACTATAGAGGCTAAAGATCTTATAAGTAAGCTGTTATGTAATGTGAAGCAGAGACTGGGCTCAAATGGTGCTGATGAAATAAAGGCTCATCCATTTTTCGATGGTGTTGAATGGGAAAGATTGTATCAAATGGAAGCTGCATTTCTTCCTGAGGTCAATGATGAGTTAGACACTCAAAATTTTGAAAAGTTTGATGAGTCCGACCAACAGGCTCAATCATCAGCAAGAGCTGGCGGTCCATGGAGAAAGATGCTTTCATCCAAAGACTTGAATTTTGTGGGATACACATACAAAAACTTTGAAATTGTCAACGACTATCAAGTTCCTGGGATGACTGAATTAAGGAAGAAAACTACTAAAGTAAAGAAACCATCTGTGAAGTCTCTTTTTGCTGTTAATATACAAACTGGAGAGGAGGTGGCTATCAAGCTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCAAAATTGTATCTGCTTCTTCAAGGAGGAACGGGGATTCCCCATCTCAAGTGGTTTGGAGTAGAGGGAGATTACAATGCCATGGCAATCGATCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCTAGAGGTTTCCTTCACCGTGACATTAAGCCAGATAATTTTTTGATGGGCCTAGGACGTAAAGCAAACCAGGTTTACATCATCGACTATGGCCTTGCAAAGAAATACAGGGATCTTCAGACACATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCAAGTGTTAACACACATCTTGGAATCGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTACTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGCACCAAAAAGCAAAAATATGATAAAATCAGTGAGAAGAAGATGTCAACTCCGATAGAGGTGCTTTGCAAATCGTATCCTTCCGAGTTTGTTTCATATTTTCACTACTGCCGATCGTTGCGGTTTGAGGACAAGCCTGATTATTCATATTTAAAGAGGCTTTTTCGAGATTTATTTATTCGAGAAGGCTATCAGTTTGACTATGTTTTTGATTGGACTATATTGAAGTATCCACAGATTGGTGGCAGCTCTAGAGGGCGGCATGAAAGTGGCAAGGCAGCTATGCATGCGGGACCATCTATACAAAAGCCAGAGAAGATATCAGTTGGGAAAGAGATTCGGGAAAAATTCTCTGGTGCTGTTGAAGTTTTCTCCAGGAGGAATCCAACAAGTTCTAGTCCTCGTGGTGATCACTCCAAACATAGGGGTTTGGAGGAAGTAGCAGTGCACAAGGATGCATATCATGATCAAGAGAAGGGACGGAATTCATCTCGATATGGCAGCAGTTCAAGGAGAGCCATAATCTCATCATCAACCAGGCCAAGTTCCTCCGGCGATCATACGGACAGTCGAACTGGCCGGCTCACCTCAAGTGTGAGCCGTCCATCTACTACACACAGAAACATTCAACCTGTGTACGAGACAAAACAACCAACGTACACACGGTCTGGATCTACCAGAGGCAACCGTGATGATCCTCTCCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 2850 0.4035 MDSARSWLQKFQPRDKLRAPTRKKDDTHGGNEAPNVPMDEATLSNITKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCKEKTTDHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLRLSDFGLCKPLDCSTLEETDFSTGNNTNGVTQNDESGRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLTIEAKDLISKLLCNVKQRLGSNGADEIKAHPFFDGVEWERLYQMEAAFLPEVNDELDTQNFEKFDESDQQAQSSARAGGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMTELRKKTTKVKKPSVKSLFAVNIQTGEEVAIKLEPVKTKHPQLHYESKLYLLLQGGTGIPHLKWFGVEGDYNAMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSRGRHESGKAAMHAGPSIQKPEKISVGKEIREKFSGAVEVFSRRNPTSSSPRGDHSKHRGLEEVAVHKDAYHDQEKGRNSSRYGSSSRRAIISSSTRPSSSGDHTDSRTGRLTSSVSRPSTTHRNIQPVYETKQPTYTRSGSTRGNRDDPLRSFELLSIRK* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00378 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Lapu6g00378 949 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Lapu6g00378 949 ProSiteProfiles Protein kinase domain profile. 479 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00378 949 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Lapu6g00378 949 Gene3D Transferase(Phosphotransferase) domain 1 204 276 - -
Lapu6g00378 949 Gene3D Transferase(Phosphotransferase) domain 1 308 435 - -
Lapu6g00378 949 MobiDBLite consensus disorder prediction 812 826 - -
Lapu6g00378 949 MobiDBLite consensus disorder prediction 9 30 - -
Lapu6g00378 949 Pfam Protein kinase C terminal domain 434 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lapu6g00378 949 CDD STKc_CK1_delta_epsilon 515 769 - -
Lapu6g00378 949 MobiDBLite consensus disorder prediction 933 949 - -
Lapu6g00378 949 CDD MobB_NDR_LATS-like 54 115 - -
Lapu6g00378 949 SUPERFAMILY Protein kinase-like (PK-like) 513 777 IPR011009 -
Lapu6g00378 949 Gene3D Transferase(Phosphotransferase) domain 1 498 822 - -
Lapu6g00378 949 PANTHER SERINE/THREONINE-PROTEIN KINASE 578 723 - -
Lapu6g00378 949 ProSiteProfiles Protein kinase domain profile. 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00378 949 MobiDBLite consensus disorder prediction 868 932 - -
Lapu6g00378 949 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lapu6g00378 949 MobiDBLite consensus disorder prediction 1 39 - -
Lapu6g00378 949 Pfam Protein kinase domain 513 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00378 949 Pfam Protein kinase domain 121 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00378 949 FunFam Non-specific serine/threonine protein kinase 314 433 - -
Lapu6g00378 949 SUPERFAMILY Protein kinase-like (PK-like) 93 457 IPR011009 -
Lapu6g00378 949 MobiDBLite consensus disorder prediction 838 867 - -
Lapu6g00378 949 SMART serkin_6 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00378 949 MobiDBLite consensus disorder prediction 788 949 - -
Lapu6g00378 949 Gene3D Phosphorylase Kinase; domain 1 91 203 - -
Lapu6g00378 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Lapu6g00378 949 SMART pkinase_C_6 416 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lapu6g00378 949 FunFam Casein kinase 1-like protein 492 817 - -
Lapu6g00378 949 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Lapu6g00378 949 CDD STKc_NDR_like 118 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00378 Lapu-Chr6 3774974 3801525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00378 1 514 AGC Kinase Gene Family AT2G20470 77.778 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lapu6g00378 Pkinase 3.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00378 K08790 - gmx:100783286 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00378 6 3774974 3801525 Lapu6g00378 6 3774974 3801525 ECH
Lapu6g00378 6 3774974 3801525 Lapu8g00455 8 20948598 20956155 PCT