Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00375 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCTGGCTTTCGGTTTTATCCGAGTGACGAGGAATTGGTCTGTCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTTCTGAAGGGTACCTTGGTGGAAATTGATCTCCACATATGTGAACCATGGCAACTTCCAGAGGTGGCTAAGCTGAATGCGAACGAGTGGTACTTCTTCAGCTTCCGGGACCGCAAATACGCGACGGGGTTTCGAACAAACCGAGCAACCACATCAGGGTATTGGAAAGCAACGGGGAAGGATCGGATGGTGGTGGATCCGACCACGCAAGAGGTTGTAGGGATGAGGAAAACGTTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACCGGGTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGGAGGACTGGGTGTTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATAACAATAGTTCCAAACTCATGTATGAGTATGAGACAACACCTCAATCCCTAACTTTGGCTTCGTCATCTCCCACCAACCAAACCATGCCTGGTGGGTACAACAGATTCCCCACCTCTTTCCCTTCCTCAATGCCATTGCCAACCCACCACCACCACCACCATCACCATCATAATTTCAACACAAACCAAAACTCTTCTTTCATGGACCTCCTTCACTTCTCTCGGGACACCAACGCCACCAACGCCATCGTTACTCAAATTACTTCCAAAGGTGATGATGGATATGGTTTCTTGTGGGACATGGATCTGGAAGAAAATAGCCTAGAAGATGCTGTGCCTTCAAACTTGGATTCAATAACGTTCGAGATTGATAATAACACCAATGATAATAATATGGTATTCCTATAA 888 0.4685 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRMVVDPTTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNSSKLMYEYETTPQSLTLASSSPTNQTMPGGYNRFPTSFPSSMPLPTHHHHHHHHHNFNTNQNSSFMDLLHFSRDTNATNAIVTQITSKGDDGYGFLWDMDLEENSLEDAVPSNLDSITFEIDNNTNDNNMVFL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00375 295 MobiDBLite consensus disorder prediction 200 220 - -
Lapu6g00375 295 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Lapu6g00375 295 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Lapu6g00375 295 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 222 - -
Lapu6g00375 295 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Lapu6g00375 295 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00375 Lapu-Chr6 3722044 3728666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00375 6 159 NAC Transcription Factor Family AT1G56010 57.407 1.01e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu6g00375 NAM 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00375 - - gmx:100782751 484.952