Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00374 ATGATGGAAGCGGATTATGGAAATGATTCCAACAAATTTCAGGAGAAAGAAAATCTTTCAGTTCCCCCTGGTTTTGTATCCCTCACATCTTTCATTTTGAGAAGGGGTGAAAATGTTGAGAAAAATGATAAATCTACAAGTTTTCCAATTGCACCTGAACAAGAGCCAGTCTGCATGAAGACAAAACTTGAGACAAATGACATTAATGCCTATAGACAGGGTCTTAAGCGTCGGCCGTGGATAAACATGGACCCGAGCAGCCACCACAAGCCTGAGGAATCTCGCACAAAGCATCTTCCTATGAACCTACCTTTAAATGCTGGTCGTCCAAAAGGGACCATACGTGGATGTCCAAACTGCAGTAATTGTGTGAAGGTAACAGCAAGGTGGCATCCTGAGGATGCGATAAGAGAAGCTTTGGAAGAAGCTCCTATTTTCCACCCAACAGAAGAGGAATTCAAAGACACACATAAATATATTGCAAGCATACGTTCCAAAGCAGAACCTTATGGAATTTGCCGTATTGTCCCTCCTACTTGTTGGAAACCACCATGCTTTCTTCAGAGAGAAAACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCAAATTGATGGCCACCAAGTTCAGCATGCTCAAGAAATTAAGGGTACTGCTTTCGAAAATACAAAAACCAAGAGAAAAAGAGATATAAAAGTAGCTTTGGGCTCTCAGTTTTGTAAAAGAAACACCAGCACTCCAAATAACCATAATGTTGAAGAATGTGACTATGAGTCTCAACCTGGTCCTAAATTCAGTCTCAAGTCATTTAAGGAATATGCAGATATATTTAAGAATCAGTACTTCAATTACAAGGATAAGAAGAAGTTCATAGGTTCCAATATAAAATTAGCTATACGTCAGCAGTGGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGCCGAATTGTTCAAAATCCTACTGAAGAAATTGAGGTGCTTTGTTGTAACAAATTGGAGGCTGGAGTTTTTAGTAGTGGGTTTCCGACAGTTTCTGATCCTGTGGAGGCACACACTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATACTTTCAGGTTCCCTTCTTTCGTTTGAAAGCTCTGATGTTTCATGTAACTTTGCCCCCATTATTAGTGTGGGAATGTGCTTCTCTGCAGTCAACTGGAAAGTTGAGGAGCACCACTTATACTCATTATCCTACTTACATTTGGGTGAACCGAAAGTGTGGTATAGCGTCCCAGGAAGATTTGCTGCTAACTTTGAAACAATTTGGAAAAAGTATCAACCAGATTTGCATGAAGGAAAGCCTCGTATGCATGATAATATGGTGATGCAATTATCATGCTCCATATTGAAGGCAGAGGGCATACCTGTATATCACTGTGTTCAGTATCCTCGTGAATTTGTTCTTGTCTTCCCTGGGGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAATGTTGTAGAGCTTTATCGTGAACAGAGGAAAAAGACATTACTTTCATATGACAAGCTTTTGTTAGGAGCAGCAAATGAAGCTGTCAGGGTCCAGTGGGAAACTGGTCTGTGCATGAAGAGCACATCGTCAGACAGCTCAACATATAAAGGTGCCTATCAAAAAAATGAGTTTTTAACAAAAGCTTTCAACTCTCGCATCCAGAGTGAAAGTTTGAAGAGGAAATTTCTTTCCAGTTCTTTGGTATCACGGAGAATGGATGAAAAATTTTATGCCACTTGTAGAAGGGAATGTAGTATTTGCCTGTGTGATTTACACTTGTCTGCTGTTGGGTGTTCATGTTCAAATGACAAGTTTGCATGTCTTGATCATGCAAAACATTTTTGTTCTTGCACTTGGAGCAATAAAATTTTCTTCTACCGTTATGAAATCAGTGATTTGAATGTTCTTTGTCAAGCTTTGGATGGGAAATTAAGTGCGGTCTTTAAATGGGCCAAAGAGTATCTCGGATTAACTCTGAACTCTGCTGCCTCCAAGAGATCAAAAGCACGCCCAGAAAATGTTAGTGGTTCAACCTGCCCTTCGCAAGACTTGCATAAGAAAGAACCTATATCCCAGACAGCGTCAAATGAATCAAAAGGGAAACGACGTCAATTGCAGGAAATATTGAATTCATCAATGAAAAAACAAAATGAAGTGGTTTCAGGTTCTTCCAAAAACAAACAAAATGAAGTGGTACCAAACCCATCCAAGAAGAAACAAAATGAAGTGGTTTCCCAGGTCCCGCTGACTTCTGGTGGCACTCACAACTCTTATGACACTCATTCAAAAAGGAAGACAAATTTGCTTCAGTCAAGCTTTGCAGATGGTACGAAAGCAATAAATTCTGTTGGCACCAAAATTGATACGAAGATGGTTGGGCGCAAGTTAACAATTTCACAGAATGGAGATCCAAAAGCATCTAAAGTTCCATCAGTTACAAACTCACGTTACTTGTCTTTTCTACAAGAACAAGTGTTACTTGATGTTTCATCTGATAGTCTGAGCACATCTTCGTCATCAGATTCTGAAAGTAGCTAA 2622 0.3966 MMEADYGNDSNKFQEKENLSVPPGFVSLTSFILRRGENVEKNDKSTSFPIAPEQEPVCMKTKLETNDINAYRQGLKRRPWINMDPSSHHKPEESRTKHLPMNLPLNAGRPKGTIRGCPNCSNCVKVTARWHPEDAIREALEEAPIFHPTEEEFKDTHKYIASIRSKAEPYGICRIVPPTCWKPPCFLQRENIWEKSEFVAQIQQIDGHQVQHAQEIKGTAFENTKTKRKRDIKVALGSQFCKRNTSTPNNHNVEECDYESQPGPKFSLKSFKEYADIFKNQYFNYKDKKKFIGSNIKLAIRQQWEPSVENIEGEYGRIVQNPTEEIEVLCCNKLEAGVFSSGFPTVSDPVEAHTYPEYLKSGWNLNNILSGSLLSFESSDVSCNFAPIISVGMCFSAVNWKVEEHHLYSLSYLHLGEPKVWYSVPGRFAANFETIWKKYQPDLHEGKPRMHDNMVMQLSCSILKAEGIPVYHCVQYPREFVLVFPGAYHSGFDCGFNCSEAVSFAPLEWLLHGQNVVELYREQRKKTLLSYDKLLLGAANEAVRVQWETGLCMKSTSSDSSTYKGAYQKNEFLTKAFNSRIQSESLKRKFLSSSLVSRRMDEKFYATCRRECSICLCDLHLSAVGCSCSNDKFACLDHAKHFCSCTWSNKIFFYRYEISDLNVLCQALDGKLSAVFKWAKEYLGLTLNSAASKRSKARPENVSGSTCPSQDLHKKEPISQTASNESKGKRRQLQEILNSSMKKQNEVVSGSSKNKQNEVVPNPSKKKQNEVVSQVPLTSGGTHNSYDTHSKRKTNLLQSSFADGTKAINSVGTKIDTKMVGRKLTISQNGDPKASKVPSVTNSRYLSFLQEQVLLDVSSDSLSTSSSSDSESS* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00374 873 MobiDBLite consensus disorder prediction 80 103 - -
Lapu6g00374 873 Gene3D Cupin 128 505 - -
Lapu6g00374 873 Pfam jmjN domain 144 177 IPR003349 -
Lapu6g00374 873 Pfam C5HC2 zinc finger 612 662 IPR004198 -
Lapu6g00374 873 SUPERFAMILY Clavaminate synthase-like 265 547 - -
Lapu6g00374 873 PANTHER LYSINE-SPECIFIC DEMETHYLASE 138 774 - -
Lapu6g00374 873 SMART cupin_9 357 521 IPR003347 -
Lapu6g00374 873 SMART JmjN_1 142 183 IPR003349 -
Lapu6g00374 873 ProSiteProfiles JmjN domain profile. 143 184 IPR003349 -
Lapu6g00374 873 ProSiteProfiles JmjC domain profile. 357 521 IPR003347 -
Lapu6g00374 873 MobiDBLite consensus disorder prediction 82 97 - -
Lapu6g00374 873 Pfam JmjC domain, hydroxylase 389 504 IPR003347 -
Lapu6g00374 873 MobiDBLite consensus disorder prediction 694 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00374 Lapu-Chr6 3702318 3711022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00374 20 734 JUMONJI Transcription Factor Family AT1G08620 43.852 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu6g00374 JmjC 7e-32 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00374 K11446 - gmx:100804864 1319.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00374 6 3702318 3711022 Lapu6g00374 6 3702318 3711022 ECH