Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00368 ATGGGAAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCCAGAAGAAGATCTAATTCTCATCAATTACATCAACACTTATGGCCATGCTAATTGGCGTGCACTGCCCAAAATAGCTGGGCTGTTAAGGTGTGGAAAGAGTTGTAGACTCCGGTGGATAAATTATCTGAGGCCAGACATCAAACGAGGCAACTTTACCCGAGAAGAAGAAGATGCTATAATCAGTCTGCATGAAATCTTGGGAAACAGATGGTCGGCTATAGCAGTAAGATTACCTGGGAGAACAGACAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGCTGCCACAAAATTACCAACAAAACCACAACCAAAAACGAAGCAAAAAACCACCAAATTTGAATGGGAACGCTTCCAAAACCAAACTAGAACAACAAGACCCCGTGAATAACGTGCACTTTCATGCATCAACCAAAGAAGATAATAGCAAAGAGGACATGCCACTTTCTCCTCCCCAATGTTCTAGCGACATGTCTTCCCTCACCACTAGTGACAACAATACCAGCATTAATAATAATAATGATAATAATAATAATAATAATATTTGTGACATGTCCTTACATGTTAATGATATTGATACACCGGAGAACAATCTTGCATTGGATGAGGATTTCTGGTCGGAAGTTTTGTCTTCTGATGATAATTCCGGTGAGACAAGTGGATTTCCGAGCATTGATTACGGTCGGTTTGAACCAATGGCTAGTGAAGAAGGGGTGCTTGTAGATGGTAGTTCATCTAGTATGTGCGATGGCATGGACTTTTGGTGCAACGTTTACGCCAGAGCTGAGGAATTCAACCAGTTACTGGAATTATGA 879 0.4209 MGRAPCCEKMGLKRGPWTPEEDLILINYINTYGHANWRALPKIAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDAIISLHEILGNRWSAIAVRLPGRTDNEIKNVWHTHLKKRLPQNYQQNHNQKRSKKPPNLNGNASKTKLEQQDPVNNVHFHASTKEDNSKEDMPLSPPQCSSDMSSLTTSDNNTSINNNNDNNNNNNICDMSLHVNDIDTPENNLALDEDFWSEVLSSDDNSGETSGFPSIDYGRFEPMASEEGVLVDGSSSSMCDGMDFWCNVYARAEEFNQLLEL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00368 292 FunFam Transcription factor MYB15 68 144 - -
Lapu6g00368 292 CDD SANT 69 112 IPR001005 -
Lapu6g00368 292 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lapu6g00368 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu6g00368 292 CDD SANT 16 61 IPR001005 -
Lapu6g00368 292 MobiDBLite consensus disorder prediction 114 199 - -
Lapu6g00368 292 FunFam MYB-related transcription factor 13 66 - -
Lapu6g00368 292 SMART sant 66 114 IPR001005 -
Lapu6g00368 292 SMART sant 13 63 IPR001005 -
Lapu6g00368 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu6g00368 292 MobiDBLite consensus disorder prediction 115 157 - -
Lapu6g00368 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu6g00368 292 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Lapu6g00368 292 Gene3D - 69 148 - -
Lapu6g00368 292 Gene3D - 14 66 - -
Lapu6g00368 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu6g00368 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Lapu6g00368 292 MobiDBLite consensus disorder prediction 169 199 - -
Lapu6g00368 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00368 Lapu-Chr6 3636767 3638517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00368 1 292 MYB Transcription Factor Family AT2G31180 48.148 1.60e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu6g00368 Myb_DNA-binding 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00368 K09422 - gmx:100775603 421.394