Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00362 ATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGATTCAACCCGAAACGGCGTTCGGGTGTGGATTGGAACGTTCGACACGGCGGAAGCGGCTGCTCTGGCTTATGACCAGGCGGCGTTCTCGACGAGGGGGTCTCTGGCGGTGCTGAATTTCCCGGAGGAAGTGGTGAGAGAGTCCCTGAAAGACATGCCGAGTAAGCCTTGGGAGGAAGGTTCTTCCCCTGTTTTGGCGCTCAAGAGAAAACACACTATGAGGAGGAAGTCCAGTTTGAAGAAGAAGAAAAGCAAAAGCGATGTGAGGGATCAGTTGCAGTTCTGCTCCACATCGCAGAATGTGCTGGTGTTGGAGGATTTGGGTGCTGAGTACCTTGAACAGCTTTTGAGTTTGACTTATTAG 417 0.5324 MYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRRKSSLKKKKSKSDVRDQLQFCSTSQNVLVLEDLGAEYLEQLLSLTY* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00362 138 PRINTS Ethylene responsive element binding protein signature 25 41 IPR001471 GO:0003700|GO:0006355
Lapu6g00362 138 PRINTS Ethylene responsive element binding protein signature 2 13 IPR001471 GO:0003700|GO:0006355
Lapu6g00362 138 Pfam AP2 domain 2 51 IPR001471 GO:0003700|GO:0006355
Lapu6g00362 138 PANTHER DNA-BINDING DOMAIN 2 134 IPR044808 GO:0003700|GO:0009873
Lapu6g00362 138 CDD AP2 2 60 IPR001471 GO:0003700|GO:0006355
Lapu6g00362 138 Gene3D AP2/ERF domain 1 61 IPR036955 GO:0003700|GO:0006355
Lapu6g00362 138 SUPERFAMILY DNA-binding domain 2 60 IPR016177 GO:0003677
Lapu6g00362 138 ProSiteProfiles AP2/ERF domain profile. 1 59 IPR001471 GO:0003700|GO:0006355
Lapu6g00362 138 FunFam Ethylene-responsive transcription factor 2 1 60 - -
Lapu6g00362 138 SMART rav1_2 1 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00362 Lapu-Chr6 3559385 3560083 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00362 2 134 AP2-EREBP Transcription Factor Family AT2G31230 57.143 3.95e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g00362 AP2 1.4e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00362 6 3559385 3560083 Lapu6g00362 6 3559385 3560083 ECH
Lapu6g00362 6 3559385 3560083 Lapu7g00757 7 8967336 8968121 PCT