Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00360 ATGGCTTCCCCTTTGTTTCAGCATTCAGATTGGGGCATGTTGATGGATCCTTCTGATATTTTGTTTGAACCATTTTCAAGCAAAGATATTGGTTATGACCCTTTCCATGACTCTCTTTCCTTTGATATGATTGACCACTCCAGGGATCCACATGAGCCAAGTGAAGTGATTGAAGCTATGGAAGTGCTGCAAAGTAAGAAGTCTTATACTGGGGTAAGGAGAAGACCGTGGGGAAGATTTGCAGCAGAGATCAGAGACACGACGAGGAAAGGTACGAGGGTTTGGCTTGGAACGTTTGCTAATGCAGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATTTGTCATGAGAGGATCAAATGCAGTGCTGAATTTTCCTGTCAAAAGGGTTATAGAGTCTTTACAAGAGCTGAATTATTTTGGTTGCAGCCAAGGGATGAATTATGAACCTATTCGATCGGAATCTGATGAGCTGATTTACACCCCTAGATTAGCATCACCTGGTGCACTCAAAATAAAAAAACGTAGTATGTGTGTGTTAAAGAAGAAGGTTTGA 555 0.418 MASPLFQHSDWGMLMDPSDILFEPFSSKDIGYDPFHDSLSFDMIDHSRDPHEPSEVIEAMEVLQSKKSYTGVRRRPWGRFAAEIRDTTRKGTRVWLGTFANAEEAALAYDQAAFVMRGSNAVLNFPVKRVIESLQELNYFGCSQGMNYEPIRSESDELIYTPRLASPGALKIKKRSMCVLKKKV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00360 184 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Lapu6g00360 184 Gene3D AP2/ERF domain 67 128 IPR036955 GO:0003700|GO:0006355
Lapu6g00360 184 CDD AP2 67 127 IPR001471 GO:0003700|GO:0006355
Lapu6g00360 184 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
Lapu6g00360 184 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Lapu6g00360 184 PANTHER DNA-BINDING DOMAIN 58 143 IPR044808 GO:0003700|GO:0009873
Lapu6g00360 184 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Lapu6g00360 184 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Lapu6g00360 184 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Lapu6g00360 184 FunFam Ethylene-responsive transcription factor 2 67 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00360 Lapu-Chr6 3528790 3529901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00360 57 143 AP2-EREBP Transcription Factor Family AT3G23240 67.778 1.36e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g00360 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00360 K14516 - gmx:100800600 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00360 6 3528790 3529901 Lapu6g00360 6 3528790 3529901 ECH
Lapu7g00753 7 8884223 8884867 Lapu6g00360 6 3528790 3529901 PCT