Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00359 ATGTATTCTGTCCAAGATAAAGGTGGAGAACTATCGGGAATAGTTGTAGAAAAGCAAAAACTGTTGATTAAGATTCTTCTAGAATCCTTTTATCAGTTGTTCCCCTTTAGAAGAATTCCTTTATCAGTTGTTCCCCTTTATATTGGGTCTAGTGTCAGTGAGTGCAAGGAGATGCAGGGTTCAAAGGAAAGGCATCAGTGGTGGTTGAGTGGTCAAGTGTTCACGGCTAAGGAGGGCCGTGAGGCGGGCACCAGCGTTGGGGTTGGAGGGCGGAGGGATGGGCTGGGTGGGGAAGGAGAGGGAACATTTGTGGTGGAGAGGGAGGTCGAAGGCGGGAAAGTGAAAGGGCGCGTTGGCGGAGAAGGGCGGAGGATCACCACTCAAATTGCACCAATTGATGTCAGTTCTGTGGAGCCTCGCAACCATGGCCTCCAAACTTCCATCATAGCCTCTCTGCCTAAACTGTTCTACAACCAAACCGAACAGTTCAAGCAAGGCCAAGTCATAGAGTGTTCAGTTTGCCTAGGCACCATTATGGAGGATGCAATTACTAGACTGCTACCAAATTGTAAGCACATTTTTCATGCTGATTGTGTTGATAAATTGTTTAATTCCAACACCACGTGCCCAATTTGCCGCACTGTGGCTGACCCAAAGGTGCAAGCAGAAGAACAGGGTCATTTAGCCACAAGGGTCCACCACCAAGTCCATCCCACAACACCACTTGTTGTGGGTGGTGATGAGCTACAAGATGGTGGTGAAATGGAGAAGGTGGGGTGTTCAGGTTTGAGAATAGGATCTTTCCATAGGATGGTTACTAACAGGGAAGGATCACGGAGGACTCATAGTTGTGATGAATCTACCATAGATATAGGAAGACACTGA 885 0.4768 MYSVQDKGGELSGIVVEKQKLLIKILLESFYQLFPFRRIPLSVVPLYIGSSVSECKEMQGSKERHQWWLSGQVFTAKEGREAGTSVGVGGRRDGLGGEGEGTFVVEREVEGGKVKGRVGGEGRRITTQIAPIDVSSVEPRNHGLQTSIIASLPKLFYNQTEQFKQGQVIECSVCLGTIMEDAITRLLPNCKHIFHADCVDKLFNSNTTCPICRTVADPKVQAEEQGHLATRVHHQVHPTTPLVVGGDELQDGGEMEKVGCSGLRIGSFHRMVTNREGSRRTHSCDESTIDIGRH* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00359 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 218 IPR013083 -
Lapu6g00359 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 133 223 - -
Lapu6g00359 294 Pfam Ring finger domain 170 213 IPR001841 -
Lapu6g00359 294 SMART ring_2 171 212 IPR001841 -
Lapu6g00359 294 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Lapu6g00359 294 SUPERFAMILY RING/U-box 158 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00359 Lapu-Chr6 3522656 3526741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00359 143 294 C3H Transcription Factor Family AT2G42360 34.177 5.26e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00359 K19038 - gmx:100786701 259.996