Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00358 ATGGATTTTAACTCTTCTCCTTTTTCATACCGAAGTCTAGAATCCCATCTCAACTCATGGGAAGAGTTGTTTTCGTTCAACAACCTTCCCTTGAATAATGCGACAAATGAAACGTCCTCATCCTCCAATGGAGAAATGGAGTTACATGAGCACACCTCTGATATTACACACGATGGTTCAAATCCACAACCTCTATCAATAGCTCCAACAAAGAAAGAGAAGAGACCCTATAGAGGAGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATACGAGACCCTACAAGAAATGGTGTTCGAGTATGGATTGGAACATTTGACACAGCTGAAGAAGCTGCTTTAGCTTACGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTTGCTACCCTTAACTTTTCAGCACAAGTGGTGTTGGAGTCCCTGGAAGACATGGGTTTCAAGGCAATGAGAAATGGCGTCTCACCGTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACGAAATCTAGGGCTAGCAGGAGTGGCAGCAAAAAGGTTAAAAGGGGTTGCGTCAACGGGAAATTGGATTCTACCACCGAAACTGTGCTGGTGTTGGAGGATTTGGGTCCTGAATACCTAGAGCAACTTTTGAGCTTCACTTGCCCTGGTTCTTGG 657 0.4475 MDFNSSPFSYRSLESHLNSWEELFSFNNLPLNNATNETSSSSNGEMELHEHTSDITHDGSNPQPLSIAPTKKEKRPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSAQVVLESLEDMGFKAMRNGVSPLLELKRMHVMRTKSRASRSGSKKVKRGCVNGKLDSTTETVLVLEDLGPEYLEQLLSFTCPGSW 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00358 219 CDD AP2 77 133 IPR001471 GO:0003700|GO:0006355
Lapu6g00358 219 Pfam AP2 domain 77 122 IPR001471 GO:0003700|GO:0006355
Lapu6g00358 219 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Lapu6g00358 219 MobiDBLite consensus disorder prediction 35 80 - -
Lapu6g00358 219 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Lapu6g00358 219 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Lapu6g00358 219 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Lapu6g00358 219 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Lapu6g00358 219 PANTHER DNA-BINDING DOMAIN 45 211 IPR044808 GO:0003700|GO:0009873
Lapu6g00358 219 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Lapu6g00358 219 FunFam Ethylene-responsive transcription factor 2 75 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00358 Lapu-Chr6 3517196 3517852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00358 29 219 AP2-EREBP Transcription Factor Family AT3G23240 47.208 5.40e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g00358 AP2 6.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00358 K14516 - gmx:100818907 311.997