Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00357 ATGGAGGACTCAAAGAAAAAGGTGAGTGAAGGGGAAGCAAAGGAAATTAAGTATAGAGGAGTGAGGAGGAGGCCATGGGGAAAGTTTGCAGCAGAGATTAGAGATTCAGCTAGACATGGAGCTCGTGTGTGGCTGGGGACCTTTAACACAGGTGAGGAAGCAGCAAGAGCTTATGATCGTGCTGCCTTTGAAATGAGAGGTAGTATGGCCATTCTGAACTTCCCACATGAACACCCTCCTTGCAATGTGGCTCCTCTCAGCAACAACTCCTCATCATCCAAAACTGAACTCGGTAAACAAGTTGTCATATTTGAGTGTCTGGATGACAAATTGTTGGAGGAACTCCTTGATTGTGATGACAAAAACCATCAATGA 375 0.4533 MEDSKKKVSEGEAKEIKYRGVRRRPWGKFAAEIRDSARHGARVWLGTFNTGEEAARAYDRAAFEMRGSMAILNFPHEHPPCNVAPLSNNSSSSKTELGKQVVIFECLDDKLLEELLDCDDKNHQ* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00357 124 SUPERFAMILY DNA-binding domain 17 77 IPR016177 GO:0003677
Lapu6g00357 124 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Lapu6g00357 124 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Lapu6g00357 124 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Lapu6g00357 124 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Lapu6g00357 124 PANTHER DNA-BINDING DOMAIN 11 91 IPR044808 GO:0003700|GO:0009873
Lapu6g00357 124 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Lapu6g00357 124 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Lapu6g00357 124 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Lapu6g00357 124 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00357 Lapu-Chr6 3509812 3510202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00357 14 121 AP2-EREBP Transcription Factor Family AT3G23230 56.557 7.17e-40 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g00357 AP2 8.4e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00357 - - pvu:PHAVU_001G160100g 211.075