Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00352 ATGACTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTGAGAGGTTGTGTTTTTGCTCCTTACTTTTGCCATGAACAGGGTGCCACCCATTTTGCAGCCATTCATAAGGTCTTTGGCGCAAGCAATGTTTCAAAGCTCCTTGCTCACCTTCCTGTGAGTGACCGCTGTGAAGCTGCTGTCACCATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAGCAGGTGGTGAACTTACAAGCACAACTAGCTCATCTCAGGGAACAAGCAGGTCAGATCTATCTCAATGCCTCTGCCACTGAAAACCCTAATGAGAAATACTTTGGAAAATCTACCACTTTTCCCCAATATCTTCAGAGTTGGTTCCAGATGGAGAATTCCAACTCGGCTTCACAATTTCTTCCTAAGTTCTCCACCAATACTTCAACACAGTATTATGGAAATACTAATACCCTCATGGACCCAAACCCTATTGGAAATGATGACAATTCCGTAACCGTAGAGGAAAGCATCTCATTTTCTAGCTTTGAAGAGAGTTGCAACTCCATGTCCTGTGACATGCAAAGCCAGTGGACCTTTTATCAAGTGGATAACCCTCAGTAA 651 0.4363 MTGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAHLREQAGQIYLNASATENPNEKYFGKSTTFPQYLQSWFQMENSNSASQFLPKFSTNTSTQYYGNTNTLMDPNPIGNDDNSVTVEESISFSSFEESCNSMSCDMQSQWTFYQVDNPQ* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00352 216 Coils Coil 85 105 - -
Lapu6g00352 216 Pfam Lateral organ boundaries (LOB) domain 5 103 IPR004883 -
Lapu6g00352 216 ProSiteProfiles LOB domain profile. 4 106 IPR004883 -
Lapu6g00352 216 PANTHER LOB DOMAIN CONTAINING PROTEIN 3 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00352 Lapu-Chr6 3428244 3429108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00352 5 131 AS2 family AT3G58190 76.744 1.29e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu6g00352 LOB 4.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00352 K13945 K13944 gmx:100816960 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00352 6 3428244 3429108 Lapu6g00352 6 3428244 3429108 ECH
Lapu6g00352 6 3428244 3429108 Lapu7g00740 7 8714670 8715529 PCT