Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00347 ATGGACTTAAACTACCCAGCAGAGTTCTACTCCAAGACCTCCACCCAAGAAACTACTGACCATGATCTGGTGGGAACTGGGAGATCCTACGAGTGCATCTTTTGCAAGAGAGGCTTCACCACCGCACAAGCCTTAGGTGGACACATGAACATACACAGAAAAGAAAGGGCCAACAAGACCAAACCCAGTTTCCCTCCTCCTCCTTCAACGTCTAACAAACTTGATGGAATCAATAACTATGCAGATCTCATCTTCCATTCACAGATTCCAAGCCACTCCACTGCTCCTGATGCTAATAGCTTCCGTGATGCTTGTTTTCCAGCCACTGCACTAAGTGTTAGACCTTCAAATGGTGAGGTTTTGTGTGCAGAAAAAAATCAACTGGGACACGTGTTTGTGCAGGATTGGAGGACGAGAAATTTGGGCTTGTGCACTAATCCATTGTGTTTTCATGAAGTCAAGGATAAGTTTGAAGACAGTGAAGAGAATGGCCTGGATTTGGAGCTGAGCATGAAATCAAAGCTTGGGGATGGTTCCAGTGAGAAATTGAGATGGAGGTACCCAGAATTCTTAGGAGGAAGAAGGTACTGCTCAAATGATTTTTCTCTTGAAAATAATGTCTAG 624 0.4439 MDLNYPAEFYSKTSTQETTDHDLVGTGRSYECIFCKRGFTTAQALGGHMNIHRKERANKTKPSFPPPPSTSNKLDGINNYADLIFHSQIPSHSTAPDANSFRDACFPATALSVRPSNGEVLCAEKNQLGHVFVQDWRTRNLGLCTNPLCFHEVKDKFEDSEENGLDLELSMKSKLGDGSSEKLRWRYPEFLGGRRYCSNDFSLENNV* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00347 207 Pfam C2H2-type zinc finger 30 55 - -
Lapu6g00347 207 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Lapu6g00347 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Lapu6g00347 207 PANTHER OS07G0101800 PROTEIN 22 171 - -
Lapu6g00347 207 SUPERFAMILY beta-beta-alpha zinc fingers 28 57 IPR036236 -
Lapu6g00347 207 Gene3D Classic Zinc Finger 9 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00347 Lapu-Chr6 3379054 3379904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00347 30 91 C2H2 Transcription Factor Family AT5G43540 50.000 2.24e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00347 - - gmx:102664910 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00347 6 3379054 3379904 Lapu6g00347 6 3379054 3379904 ECH
Lapu6g00347 6 3379054 3379904 Lapu7g00735 7 8656892 8657665 PCT