Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00346 ATGGAAGGAAACTATCTGACCAGAAACACGCATAAAGGGGATAGGTTTGGCTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGTAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCTAGATTGAGATCTTCCGTACCCTCATCATCATGGGTTTCTGACTGTCCTAAACCTAACCCTAGCATTATGCCTAACCCCCCTCATCTTTCACCCTCCCCTCCATCGTCGTGTCTATCTAACAATAACCTTTTGAATTGTGCTCATAGTTCTCCACTTTATAGCCCTTCTTTGACTTTGGCCTTTTCACTTACCCCACCGGTTTCTTTCAATGGAGATAAGAAACCAAGACTCGCATCTTCCCAGTTTCTTCCTCTTTCGGTTCTTCAGGGAAATGAGGAAATTAATATTTGTAATAACAAAGAGATTAGTTTGGGAGTTGAAGAAGTACAGGATTGTGCAATAGGGGAGGAATGCAAGGTTTGCAGGAGTAGTGAGCATAACATCAAGCTGGAGTTGGGAATAGGGTTTCTTAAACAACCAGAGAAATTAGATTTGGAGCTACGACTGGGGCACTAA 633 0.436 MEGNYLTRNTHKGDRFGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSVPSSSWVSDCPKPNPSIMPNPPHLSPSPPSSCLSNNNLLNCAHSSPLYSPSLTLAFSLTPPVSFNGDKKPRLASSQFLPLSVLQGNEEINICNNKEISLGVEEVQDCAIGEECKVCRSSEHNIKLELGIGFLKQPEKLDLELRLGH* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00346 210 Gene3D Classic Zinc Finger 21 73 - -
Lapu6g00346 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Lapu6g00346 210 SMART c2h2final6 32 54 IPR013087 -
Lapu6g00346 210 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Lapu6g00346 210 Pfam C2H2-type zinc finger 32 56 - -
Lapu6g00346 210 PANTHER OS07G0101800 PROTEIN 18 210 - -
Lapu6g00346 210 MobiDBLite consensus disorder prediction 55 93 - -
Lapu6g00346 210 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Lapu6g00346 210 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00346 Lapu-Chr6 3369088 3369720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00346 19 209 C2H2 Transcription Factor Family AT3G23130 41.872 1.67e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g00346 zf-C2H2_6 6.9e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00346 6 3369088 3369720 Lapu7g00734 7 8643860 8644516 PCT