Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00336 ATGCCTGCCCACGCGCTTCCAATCCCCAAACGCTCTCCGCCTCCGCTCAAAGAGGCCCATTTCAGGGGCGTCCGCAAGCGTCCCTGGGGCCGCTTCGCCGCCGAGATCCGTGATCCTTGGAAAAAGACCCGAAAGTGGCTCGGAACCTTCGACACCGCCGAGGAAGCCGCAAGGGCCTACGACACCGCAGCCAGAACGCTCCGAGGGCCCAAGGCCAAAACCAACTTCACCTACGTTGTTGCTCCCGCTCTGCACCTCCCTCCCGCGGCTGCTCCTGAATCCCAGGCCCAGGCCCGACTCGCCAGACCGGTCGAGTTCTGGGGCTCGCCGTTGTTCTTCACCACGGATACCGCTCCCGGGGCGCCGGCGAGGTCGGAGTACAAGGGCTACAAGTTGGAGAATATTGCGGGTTTTGTGGTAACCAAGGAGGAGGAGAAGAAGCCGTTTTTGTTCGACCTTAATCTGCCGGCGCCGCTCTTCTGA 483 0.6253 MPAHALPIPKRSPPPLKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFTYVVAPALHLPPAAAPESQAQARLARPVEFWGSPLFFTTDTAPGAPARSEYKGYKLENIAGFVVTKEEEKKPFLFDLNLPAPLF* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00336 160 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Lapu6g00336 160 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lapu6g00336 160 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lapu6g00336 160 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lapu6g00336 160 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Lapu6g00336 160 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 96 - -
Lapu6g00336 160 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lapu6g00336 160 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Lapu6g00336 160 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Lapu6g00336 160 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00336 Lapu-Chr6 3220522 3221004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00336 17 76 AP2-EREBP Transcription Factor Family AT5G44210 88.333 4.41e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g00336 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00336 K09286 - gmx:100816599 235.728