Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00334 ATGTCGAATCAGGTGGCGAAGGCGCGGAGGAACACGATTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGTCTTCACACGTGTGAGCCCTCCTCTCTTTCAATCCGTGTCAATTTTTTCTCCGATTTCTCTGCATTCGCTTCTTGCTTCACTCTACGCCCTGATGCGGGAGCATCTGGACTTTTTTGCAGGAAGTGCATTTATGATAAAATTACGGAAGAGGAATTGGAAAGCTGTCCAATATGCGGCATTGATTTGGGTTGTGTTCCACTCGAGAAACTGAGGCCAGATCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAAGTGAAGGCACCTGAAGTTATGACCTCAATACCATTACCAGCTAGAAGAAAGGAGAGATCTCTTTCGTCTTTGGTGGTCAGCACTCCAAGGGTATCTACACAGGCAACAATGACAGGAAGAAGAACAAAACCTTCAAGAAAGGCAAGTGGTCTGCGGACCACTAGTTTTTCCATTGAAAAGCCCATCAAAAAAGAGGAAGGATTACTGGAAGATCATCCTGAGAGTTCAAGCTCTCCTGAAACTTCTAATAAGTTTGCTCAGAATTCCGGACAGAGTATGTCCCCTTGTGAGGGTAGTCAATCCGCACCCAACAAAGGATCAGAGAATGGTGCCGAACCATGGGATGCAAAATTGGATCTCTGGAAACCTTTGAATTGTTTAGTAGAGGTGGCAAGTAGGAGTAAATCTTTCAAGTCTCATGTGCAAGGATCTGATGCTCAATTAGAAACCACTCAACTAAACGAGAGTGACTCTCAAGTGCAGAAAACTAAAAATAAGGAAAATAAACGTAAGGCAAAAGTTGAGGATGAAAAGATTAGCCCTTATCCTGTCTCTTCAGATACAGCAAAACCCAATAAATTACGCAGAATGCGCAAGAAGAAGGAGCCTGCTTCTGGAGAATCAAGCATATCACCCCAAGCTGTGCTGGATTCTGCCACTAGTAATAGACTCTCAAGGACTGGTCCAATCTGGTTCTCCTTAGTAGCTTCTGAAACCCAGGGAGGAGATGCACCCTTACCACAAATTCCTGCAAGCTATGTGAGAATAAAGGATGGTAGCGTACCAGTCTCATTCATCCAAAAATACCTAATGAAGAAACTGGACTTGACTAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACATTGCGGCTATATAATTTGGTTGAGTTGTGGCTGGATACAGCATCCACCTCACAGAGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTAATGGTATTGGCTTATGCTCGGAAGGTTCCACACCCTTGA 1392 0.4425 MSNQVAKARRNTIVACMTCPLCNKLFREATTISECLHTCEPSSLSIRVNFFSDFSAFASCFTLRPDAGASGLFCRKCIYDKITEEELESCPICGIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVMTSIPLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPSRKASGLRTTSFSIEKPIKKEEGLLEDHPESSSSPETSNKFAQNSGQSMSPCEGSQSAPNKGSENGAEPWDAKLDLWKPLNCLVEVASRSKSFKSHVQGSDAQLETTQLNESDSQVQKTKNKENKRKAKVEDEKISPYPVSSDTAKPNKLRRMRKKKEPASGESSISPQAVLDSATSNRLSRTGPIWFSLVASETQGGDAPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLRLYNLVELWLDTASTSQRIPATIGSSAKDFVMVLAYARKVPHP* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00334 463 MobiDBLite consensus disorder prediction 146 181 - -
Lapu6g00334 463 MobiDBLite consensus disorder prediction 199 232 - -
Lapu6g00334 463 MobiDBLite consensus disorder prediction 261 284 - -
Lapu6g00334 463 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 459 IPR044807 GO:0004842
Lapu6g00334 463 MobiDBLite consensus disorder prediction 285 305 - -
Lapu6g00334 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 132 IPR013083 -
Lapu6g00334 463 MobiDBLite consensus disorder prediction 261 344 - -
Lapu6g00334 463 MobiDBLite consensus disorder prediction 183 198 - -
Lapu6g00334 463 MobiDBLite consensus disorder prediction 137 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00334 Lapu-Chr6 3190378 3197850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00334 3 382 C3H Transcription Factor Family AT2G30580 49.869 7.57e-108 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00334 K16277 - gmx:100793731 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00334 6 3190378 3197850 Lapu6g00334 6 3190378 3197850 ECH