Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00327 ATGGAGGTTGCCCTGAAGAAGGAGAACATGGGGTTTGAGGAAACTGAGCTAAGACTTGGACTGCCAGGAAACGCTGCCTCAGGCACTGAAGAAGTGCTAAGGAAGAGAGGATTCTCTGAGACTGAATCTCAGGATCATGACACTGCCACAGTGGATTTGATGCTTAATCTTTCGTCTAAGGAACCAACCACCGGAGCAGATCCAACTGACAAGCACAACACCTTGCCTAAGGAGAAGACCCTTCTGCCTGCAGATCCTGCTAAGCCTCCAGCCAAGGCACAGGTGGTGGGTTGGCCACCTGTGCGGTCCTTCCGGAAGAACATGTTAGCTGTGCAAAAGAGCGTTGGAGAAGAGAACGAGAAGAACAGCAGCCCTAATGCAAGTTTTGTGAAAGTTAGCATGGATGGAGCACCTTATCTCCGCAAAGTAGACTTGAAGATGTATAAGAGTTACCGCGAACTCTCTGATTCTTTAGGCAAAATGTTCAGCTCCTTCACCATTGGGAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAACTGATGGATCTTTTGAACAGCTCTGATTATGTCCCAACCTATGAAGACAAAGATGGTGACTGGATGCTTGTCGGTGATGTCCCTTGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATCATGAAAGGAAAGGAGGCTATTGGTCTTGGTCTTGCACCAAGAGCCATGGCAAAAAGCAAGAACAGGAGCTAG 744 0.4745 MEVALKKENMGFEETELRLGLPGNAASGTEEVLRKRGFSETESQDHDTATVDLMLNLSSKEPTTGADPTDKHNTLPKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEENEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKSKNRS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00327 247 FunFam Auxin-responsive protein 122 238 - -
Lapu6g00327 247 SUPERFAMILY CAD & PB1 domains 119 226 - -
Lapu6g00327 247 MobiDBLite consensus disorder prediction 55 95 - -
Lapu6g00327 247 Gene3D - 121 238 - -
Lapu6g00327 247 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Lapu6g00327 247 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 232 IPR003311 GO:0005634|GO:0006355
Lapu6g00327 247 Pfam AUX/IAA family 14 234 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00327 Lapu-Chr6 3118789 3121988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00327 117 230 B3 DNA Binding Superfamily AT4G23980 34.211 2.63e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu6g00327 AUX_IAA 5.7e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00327 K14484 - gmx:100810013 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00327 6 3118789 3121988 Lapu6g00327 6 3118789 3121988 ECH