Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00326 ATGGGTAGCTATGAAACTGAGCTGAATCTTAAGGCCACGGAGTTGAGGTTGGGATTGCCCGGGAGTGATGAGCCTCGAGAGAAACGTTCATCCAGTAGTAGCTCTGTTGTTAGAAGCAGCAACAAGAGATCTTCACCAGAATCCAGTGTGGAAGAGTCCAGGTGCAAAAGCAACAATAACTCTGATACTTCTGATTCCACAACCACAAGCGATCACGATCAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGATGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTACAACAGAAGAAGGTGGAGCAGGGTGATGGAACTGGAATGTACGTGAAAGTCAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAAAGTTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGATACAATGGATCTGAATACTCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAGAATAATCAAAGGATCGGAAGCAAAGGGGTTGAGTTGTTTATGA 621 0.4477 MGSYETELNLKATELRLGLPGSDEPREKRSSSSSSVVRSSNKRSSPESSVEESRCKSNNNSDTSDSTTTSDHDQDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYVKVSMAGAPYLRKIDLKVYKSYPELLMALQNLFKCTFGEYSEREGYNGSEYSPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGLSCL* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00326 206 MobiDBLite consensus disorder prediction 51 77 - -
Lapu6g00326 206 FunFam Auxin-responsive protein 105 206 - -
Lapu6g00326 206 Gene3D - 105 206 - -
Lapu6g00326 206 ProSiteProfiles PB1 domain profile. 110 202 IPR000270 GO:0005515
Lapu6g00326 206 Pfam AUX/IAA family 13 204 IPR033389 -
Lapu6g00326 206 SUPERFAMILY CAD & PB1 domains 106 194 - -
Lapu6g00326 206 MobiDBLite consensus disorder prediction 15 81 - -
Lapu6g00326 206 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 201 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00326 Lapu-Chr6 3098340 3100404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00326 101 203 B3 DNA Binding Superfamily AT2G46530 34.951 6.12e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu6g00326 AUX_IAA 7.2e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00326 K14484 - gmx:100792134 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00326 6 3098340 3100404 Lapu6g00326 6 3098340 3100404 ECH
Lapu6g00326 6 3098340 3100404 Lapu7g00711 7 8302756 8306178 PCT