Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00323 ATGGAGTCGCACGGCGGAGGACCCCTTCGTTCCCGCAGTTCCCAGTCCCCTTCTCCTTCCCACTCCGCCTCAGCCTCCGCCACATCCTCCATCCACAAGCGTAAGCGTGCGTCTGAGGACCACGCGCCTCCCTTCCCGCCCTCCTCCTTCTCCGCCGACACCCGCGACGGTGCCCTCACCTCCAATGACGACCTGGAGAGCATCTCCGCCCGCGGTGCCGACTCCGACTCAGACGACGACTCCGAGGACGCTGTCGTCGACGATGACGAAGACGACTACGACAACGAGTCCTCCATGCGCACTTTCACCGCCTCCAGACTCGGTAACCCTCCCTCCGCTCCCCGCAATACCAAGCTCAAGACTGATAACTCCGCCGTCAAAATTGAGAACTCCGACGGCGCAAAAGACGCCGTAACCGCCGGAGCCGGTGCCGCCGAGGCCGTTGTATCCGCCCCTGGCATTGTGGTTAAGGAGGACCCGACTAAGATTTTTACTGATAATTTGCAAACGAGTGGGGCTTACACAGCTCGGGAAGAGAGTCTGAAGAAGGAGGAGGAAGCAGGAAGGCTTAAATTCGTATGCCATTCAAACGATGGTGTTGATGAGCATATGGTTTGGTTGATTGGATTGAAGAATATATTTGCCAGACAACTTCCCAATATGCCCAAGGAGTACATTGTCCGGCTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGTAATCACGTTGTTGGAGGCATTACATATCGCCCGTATGCTAGCCAGAAGTTTGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCAGATTGATGAATCACTTAAAACAATATGCACGTGATGTGGATGGACTGACACATTTTCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGAGAAAGATAGATGGCAAGGTTATATAAAGGATTACGATGGAGGAATTCTCATGGAATGTAAGATAGATCCAAAGCTCCCTTACACTGATTTATCAACTATGATCCGTCGTCAAAGGCAGGCTATTGATGAAAAAATCAGAGAGCTGTCAAACTGTCATATAGTATATGCTGGAATTGATTTTCAGAAGAAAGAAGCTGGCATTCCTAAAAAAATTATTGATGACATCCCCGGTTTGAGAGAGGCTGGGTGGACTCCTGATCAGTGGGGTCATTCACGGTTCAGAAGTCTAAATGTCTCTACTGATAATACTACTAATAAAAAACATTTGTCTGGTTTTATGCGATCACTTCTAAAGGGATGTCTTTTCGAACAGTCAATGCACGAACATGCTGATGCATGGCCATTCAAGGAACCAGTTGATGCCCGGGATGTGCCTGATTATTATGACATCATTAAAGATCCAATGGATCTGAAGACAATGTCTAAGAGGGTGGAGTCAGAGCTGTATTATGTAACATTTGAGATGTTTGTAGCGGATGTCAGAAGAATGTTTGCGAATGCGCGCACATATAATTCTCCAGAAACTATTTATTACAAATGTGCTACAAGGTATTTGCTTGAACTTCGACCTCCTGGTTTATCTTTTTCCCTTCCCTGTGATGTTTCTTACATTTATGATTTTCAATGTAGGTTAGAATCTCACTTTCAAAGCAAAGTGCAAGCTGGTCTCCAGTCTGGTTCCAAAATTCAGTAA 1719 0.4648 MESHGGGPLRSRSSQSPSPSHSASASATSSIHKRKRASEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDDDSEDAVVDDDEDDYDNESSMRTFTASRLGNPPSAPRNTKLKTDNSAVKIENSDGAKDAVTAGAGAAEAVVSAPGIVVKEDPTKIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCHSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIIDDIPGLREAGWTPDQWGHSRFRSLNVSTDNTTNKKHLSGFMRSLLKGCLFEQSMHEHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESELYYVTFEMFVADVRRMFANARTYNSPETIYYKCATRYLLELRPPGLSFSLPCDVSYIYDFQCRLESHFQSKVQAGLQSGSKIQ* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00323 572 ProSiteProfiles Bromodomain profile. 449 520 IPR001487 GO:0005515
Lapu6g00323 572 Pfam Acetyltransferase (GNAT) family 237 315 IPR000182 GO:0016747
Lapu6g00323 572 CDD NAT_SF 237 291 - -
Lapu6g00323 572 SUPERFAMILY Bromodomain 446 525 IPR036427 GO:0005515
Lapu6g00323 572 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 205 349 IPR016181 -
Lapu6g00323 572 MobiDBLite consensus disorder prediction 1 123 - -
Lapu6g00323 572 MobiDBLite consensus disorder prediction 8 31 - -
Lapu6g00323 572 Gene3D - 186 350 - -
Lapu6g00323 572 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 197 344 IPR000182 GO:0016747
Lapu6g00323 572 CDD Bromo_gcn5_like 434 525 - -
Lapu6g00323 572 PRINTS Bromodomain signature 466 482 IPR001487 GO:0005515
Lapu6g00323 572 PRINTS Bromodomain signature 501 520 IPR001487 GO:0005515
Lapu6g00323 572 PRINTS Bromodomain signature 452 465 IPR001487 GO:0005515
Lapu6g00323 572 Gene3D - 412 530 IPR036427 GO:0005515
Lapu6g00323 572 MobiDBLite consensus disorder prediction 53 68 - -
Lapu6g00323 572 ProSitePatterns Bromodomain signature. 454 512 IPR018359 -
Lapu6g00323 572 SMART bromo_6 424 532 IPR001487 GO:0005515
Lapu6g00323 572 PANTHER GH11602P 87 569 IPR037800 GO:0004402
Lapu6g00323 572 FunFam Histone acetyltransferase KAT2A 187 351 - -
Lapu6g00323 572 MobiDBLite consensus disorder prediction 98 123 - -
Lapu6g00323 572 Pfam Bromodomain 448 524 IPR001487 GO:0005515
Lapu6g00323 572 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00323 Lapu-Chr6 3062694 3069890 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lapu6g00323 Bromodomain 1.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00323 K06062 - gmx:100791610 911.753