Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00320 ATGGAAAACCAATTCTTCCTCAATGCTGGTGTGCCCCCTCAGCTGCATTTTGACCCTGCACCACCTCCTTGTCCTCCCTCTTGGCAGTCACTCTCTTCTCCCATGGATGTTCAAGTTTTGAATTGTTATACTCCAGCATGGGACAAGTCAACGGATCATGGTGTTCAGTTTGATTCTGCACTTAGTTCAATGGTGTCTTCTCCTGCAGCTTCCAATTCCAACATGTCAAGTGAGAATTTTGTCATCAGGGAGTTGATTGGGAAATTGGGAAACATTGGTGGCGGTGGTGGTGGTGGTGGCTCTGATGAGATCTCACCTCATTCTCAGCCTCTGGTTGGTGCATCTTCCTACATCAATGGCAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCACCTAAGGTGAACATGAACAAGATCCCCACAATGATGAATCACTTGGTGAAAGAGGGCATGCCTCCCAGTTTGGGGACATCAATGTCCTTGAATTCCAGTGTGGCAGAATTCTCAACTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGCCCCAACAATGCTGAGTTGACTCACAGATCTTCTCCATTGGTGGAAAATGGGAAGCTCCCTAGAGTCTCAAGTAGTCCATCTCTCAAAGTGCTTGGATCTCAAATGGGTGCCCAGGAGAACACGAATTCTCCACTGCAAGACCAAATGGAAGTGGCCAATTCTCAAGAGGAATCAACAATCTCTGAACAAATTCCAAATGGGGACAATGGGGTGAAACCTTCTCCTTATGCGAATTCTAGAAAAAGAAAAGGTCCTTCCAAAGGAAAAGCCAAGGAAACTTCAACCCCCATCAACCCCCATATGGCTGCAGAAGCCAGTGAAGATTCAAATGCAAAGCGCAGCAAGCCTAACGAAGGAGAGGGGAATGAAAATGGCCAAGTGAAGGCAGAGGAAGAGTCCAAAGGGGTAACTAGTAATGCAAATGACGACAAACAGAACAGGAGTAACTCAAAACCTCCAGAGCCTCCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCCACTGACAGTCATAGTCTTGCAGAAAGAGTCCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTCACAGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTCCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCGAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCACTAGATTCCTCAGCACCAGCCTTTTATGGGCAACACCCTCAGCCAAACCCAGCAATCCACAGTAACATTCCTAATGGAACTGTGTCCCACACCTCAGTGGACCCATTAGATACTGGTTTGTGCCAAAACCTTGGCATGCAGTTACCTCACCTAAATGCCTTTAATGAAGGTGGCTCTCAGTATCCAATAACATTCTCTGAAGATGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAATACAATCTCAGAGTTTCAATGGCTCAAATCAAGTACCCCTATGA 1695 0.4519 MENQFFLNAGVPPQLHFDPAPPPCPPSWQSLSSPMDVQVLNCYTPAWDKSTDHGVQFDSALSSMVSSPAASNSNMSSENFVIRELIGKLGNIGGGGGGGGSDEISPHSQPLVGASSYINGNNSTNTSCYSTPLSSPPKVNMNKIPTMMNHLVKEGMPPSLGTSMSLNSSVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQLGPNNAELTHRSSPLVENGKLPRVSSSPSLKVLGSQMGAQENTNSPLQDQMEVANSQEESTISEQIPNGDNGVKPSPYANSRKRKGPSKGKAKETSTPINPHMAAEASEDSNAKRSKPNEGEGNENGQVKAEEESKGVTSNANDDKQNRSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHPIFPLDSSAPAFYGQHPQPNPAIHSNIPNGTVSHTSVDPLDTGLCQNLGMQLPHLNAFNEGGSQYPITFSEDDLHTIVQMGFGQTANRKTPIQSQSFNGSNQVPL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00320 564 MobiDBLite consensus disorder prediction 192 212 - -
Lapu6g00320 564 SMART finulus 376 426 IPR011598 GO:0046983
Lapu6g00320 564 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 252 476 IPR024097 GO:0006355
Lapu6g00320 564 CDD bHLH_AtBPE_like 360 445 - -
Lapu6g00320 564 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 370 420 IPR011598 GO:0046983
Lapu6g00320 564 MobiDBLite consensus disorder prediction 472 491 - -
Lapu6g00320 564 Pfam Helix-loop-helix DNA-binding domain 374 421 IPR011598 GO:0046983
Lapu6g00320 564 MobiDBLite consensus disorder prediction 192 361 - -
Lapu6g00320 564 MobiDBLite consensus disorder prediction 544 564 - -
Lapu6g00320 564 Coils Coil 417 437 - -
Lapu6g00320 564 Gene3D - 367 442 IPR036638 GO:0046983
Lapu6g00320 564 FunFam Basic helix-loop-helix transcription factor 367 439 - -
Lapu6g00320 564 MobiDBLite consensus disorder prediction 219 270 - -
Lapu6g00320 564 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 439 IPR036638 GO:0046983
Lapu6g00320 564 MobiDBLite consensus disorder prediction 308 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00320 Lapu-Chr6 3005206 3008251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00320 1 530 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.444 1.68e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g00320 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00320 - - gmx:100787699 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00320 6 3005206 3008251 Lapu10g00990 10 11579389 11583390 PCT