Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00285 ATGGTTAGGGGTCAAAAAAGTGTAGTAGCTATGGTTAACCAGGAGAGAAAAAGGAAGATGAAAAACGGGTCTAATGGGTTTTGGTCCATTTTCATGCATGCCGATGGCAAAGATTTGTTTTTTATGATTTTAGGTACCATTGGGTCTGTTGGGGAGGGCTTCGCCACTCCTCTAGTGGTGTATATCAGTAGCCGCATGATGAATAACATTGGGAGTTCATCCAACATGGATGGAAACACCTTCATCCATAGCATCAATAAGAATGCAGTGGCGTGGTTATATTTAGCTGGTGCCTCTTTTGCCGTTTGCTTCCTCGAGGGTTACTGTTGGACAAGAACAAGCGAAAGACAAGCAGCGAGAATGAGATGCAGGTATCTGAAAGCAGTGCTTAGACAAGATGTCGCGTACTTCGATTTGCATGTCACAAGCACGTCAGAGATCATCACCAGCGTCTCCAACGACAGCCTCGTAATCCAAGATGTTCTCAGTGAAAAGGTTCCGAATTTCTTGATGAACATTTCATTGTTCGTCGGGAGCTACATAGCGGCGTTTGCAATGTTGTGGAGGCTGGCCATTGTGGGGTTTCCTTTCGTGGTTCTTCTGGTGATCCCGGGATTAATATACGGAAAGACGTTATTGGGGTTGTCAAGTAAAATCAGAGAAGAGTATAATGAAGCAGGAACAGTGGTGGAACAAGCAATTTCATCCATTAGAACCGTTTATTCCTTCGTTGGGGAAAGCAAGACCATGAACGCTTTCTCAAACGCGCTTCAAGGGACGGTGAAGTTGGGCCTAAAGCAAGGCTGGGCCAAAGGCTTAGCCATTGGTAGCAACGGCGTCGTTTTCGCCATTTGGGCTTTCATGTGCTATTACGGCAGCAGACTCGTTATCTATCATGGCGTCAAAGGAGGGACAGTTTTCGCGGTTGGAGCAACCCTGGCTGTTGGTGGACTGGGACTGGGAGCGGGTTTATCGAACGTGAAGTACTTTTCGGAAGCGGGTGCGGCAGCGGAGCGTATAAAGGAGGTGATAAAGAGGGTTCCGGGGATTGATTCTGAGAGCGAGGAGGGGGAGATTCTGGAGAGGGTTTACGGGGAAGTGGAATTTGAGAGGGTGGAATTTGCGTACCCATCGAGACCAGAGAGTGCAGTATTGAATGGGCTGAGTGTGAGGATTCCTGCAGGGAAGAGAGTGGCGTTGGTTGGGGAGAGTGGTTCGGGGAAGTCGACGGTGATAGCGCTACTGCAGAGGTTTTATGACCCATTGGGGGGAGAGGTGCGTTTGGATGGGGTGGGGATTCAGAAGCTGCAGGTCAAGTGGGTGAGGTCCCAGATGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTTGCGACAAGCATTAAAGAGAACATACTTTTTGGCAAAGAGGATGCCACGGATGACCAAGTTGTTGAGGCTGCAAAAGCTGCTCATGCTCATGATTTCATCTCGCTTCTGCCTCACGGTTACCAAACACAGGTCATAACTCTACTCTTCCCTATCATATCTACTCTACCACTACTCCTACTCCCCTACTGCACCTATCACCCTTTATTAGTGGGAGAGAGGGGGATTCAGCTGTCAGGGGGACAGAAACAGAGGATAGCAATTGCGAGGGCAATAATCAAGAAACCGCGAATTTTCCTTCTCGACGAAGCAACAAGCGCGCTAGACACAGAATCGGAGCGACTCGTCCAGCTGGCACTGGACAACGCCGCCGCGGGTTGCACCGCTATCATCATCGCCCACCGTTTATCCACCATCCGAAACGCAGACCTCATCGCCGTCGTCGGGGGCGGAAAGGTCCTAGAGATGGGCTCGCATGATGAGCTCCTCCAAAACGACACAGGCGCCTACGCCTCCGCGTGCCGCCTCCAGCAACAAACGGAGAAAGCGAAAGTAGCCGAAAGCACGGAAACTGATGCTCCAGGGAGTGTCTCCTTCTCGCTATCAACCAGCGATACGGAAAACGCGAGCCCGGTGGAGCCATTTGGTGGGAGTGGTAGTGACGTGGCAGAAGGGAAGAAGGTAGGCGCGCCGTCGTTTCAGAGACTGGTATCGCTGAGCCTCCCCGAGTGGAAGCATGTGGTTTTGGGGTGCTTAAACGCGATGGTGTTCGGTGCCGTTCAGCCAGTTTACGCATTCACGATGGGGTCCACTATACTGTTGTATTTTCACGCGGATCATGAGGAGATAGTGAGGAAGACTAGGATCTACTCCTTCGCCTTTCTGGGCCTCTTTGTGGTGTCTTTCATTGCGAATGTTGGGCAGCATTATTGTTTCGCATACATGGGGGAATACTTGACCAAACGGGTCAGAGAGACCGTGCTTTCCAAAATCCTCACTTTCGAGGTTGGATGGTATGATTTGGACGAAAACTCCAGTGGCGCCATCTGTTCCAGGCTTGCCAAAGACGCCAATGTGGTGAGGTCTCTAGTGGGAGATAGAATGGCATTGCTGGTACAGACATTTTCTGCGGTGATAACAGCCTACACGATGGGTCTGATAATTTCCTGGAGGCTTTCCATTGTTATGATAGCGGTACAACCAATCATCATAGCTTGCTTTTACACAAGGCGTGTCCTTCTCAAGAGCATGTCCAGCAAGTCCATGAAGGCCCAGCAACAAAGCAGCAAATTAGCATCAGAAGCGGTTTCCAATCTCCGAACAGTCACAGCCTTTTCTTCTCAGGACCGGATTCTGAAAATGCTTGAAGCGGCCCAACAGGGCCCAAGCAGAGAGAACATTCGGCAATCGTGGTTTGCTGGTATTGGGCTTGGATTCTCTCAAGGCCTTGCATCTTGCGTTTGGGCCCTAGACTTTTGGTACGGTAGCAAGCTCATCTCGTACGGGCACATAACAACAAAAACGTTCTTTGAGAGCTTCATGGTTTTGGTGAGCACAGGGAGGATAATTGCGGATGCGGGAAGCATGACCACGGATCTTGCTAGAGGTGCTGATGTTGTGGCCTCTACTTTTGGTATCATAGATAGGTGTACAAAAATAGAGCCTGATGACCCAAATGGGCACAAGGCAGAGAAGTTGGTGGGTGAAATAGAGTTTCATGACGTGCATTTTGCGTACCCCACCAGGCCTGATGTGGGTATCTTCCAAGGGTTCTGTATAAAAATGGAGGCAGGGAAATCAACGGCGTTGGTGGGGCAAAGTGGATCTGGGAAATCAACGATCATAGGGCTAATAGAGAGATTTTACGATCCACTTAGAGGGATGGTGACAATAGATGGGATGGACATAAGAAGGTATAACCTAAAGTCACTAAGGAAGCACATAGCACTTGTGAGCCAAGAGCCAACGTTGTTTGGTGGGACCATAAGAGAGAACATTGCATATGGAAAAGGTGGGAAGGTTGATGAGAGTGAGATTATAGAGGCAGCACGAGCAGCGAACGCTCATGATTTCATAGCGGGTCTGAAGGAGGGGTACGAGACATGGTGCGGGGAAAAAGGGGTACAACTTTCAGGGGGTCAAAAGCAAAGGATAGCAATAGCGAGGGCCATATTGAAGAACCCTAAGGTGTTGCTGTTGGACGAGGCCACAAGTGCATTGGATGGTCAATCAGAGAAGGTGGTGCAAGATACGTTGATGAGGGTAATGATAGGGAGGACCAGCGTGGTGGTGGCGCACAGGTTGAGCACCATTCACAGTTGTGATGTTATTGCTGTGTTGGAAAAGGGGAGGGTGGTGGAGACTGGAACCCACTCCTCCTTGTTGGCCAAAGGACCATGTGGAGCTTATTACTCCTTGGTGAGTCTTCAGACCAGACATGCAGCCACACCCAGCAACACTTGTACTAAAGCTACCCACTCTGTCAGTTGA 3852 0.4995 MVRGQKSVVAMVNQERKRKMKNGSNGFWSIFMHADGKDLFFMILGTIGSVGEGFATPLVVYISSRMMNNIGSSSNMDGNTFIHSINKNAVAWLYLAGASFAVCFLEGYCWTRTSERQAARMRCRYLKAVLRQDVAYFDLHVTSTSEIITSVSNDSLVIQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFVVLLVIPGLIYGKTLLGLSSKIREEYNEAGTVVEQAISSIRTVYSFVGESKTMNAFSNALQGTVKLGLKQGWAKGLAIGSNGVVFAIWAFMCYYGSRLVIYHGVKGGTVFAVGATLAVGGLGLGAGLSNVKYFSEAGAAAERIKEVIKRVPGIDSESEEGEILERVYGEVEFERVEFAYPSRPESAVLNGLSVRIPAGKRVALVGESGSGKSTVIALLQRFYDPLGGEVRLDGVGIQKLQVKWVRSQMGLVSQEPALFATSIKENILFGKEDATDDQVVEAAKAAHAHDFISLLPHGYQTQVITLLFPIISTLPLLLLPYCTYHPLLVGERGIQLSGGQKQRIAIARAIIKKPRIFLLDEATSALDTESERLVQLALDNAAAGCTAIIIAHRLSTIRNADLIAVVGGGKVLEMGSHDELLQNDTGAYASACRLQQQTEKAKVAESTETDAPGSVSFSLSTSDTENASPVEPFGGSGSDVAEGKKVGAPSFQRLVSLSLPEWKHVVLGCLNAMVFGAVQPVYAFTMGSTILLYFHADHEEIVRKTRIYSFAFLGLFVVSFIANVGQHYCFAYMGEYLTKRVRETVLSKILTFEVGWYDLDENSSGAICSRLAKDANVVRSLVGDRMALLVQTFSAVITAYTMGLIISWRLSIVMIAVQPIIIACFYTRRVLLKSMSSKSMKAQQQSSKLASEAVSNLRTVTAFSSQDRILKMLEAAQQGPSRENIRQSWFAGIGLGFSQGLASCVWALDFWYGSKLISYGHITTKTFFESFMVLVSTGRIIADAGSMTTDLARGADVVASTFGIIDRCTKIEPDDPNGHKAEKLVGEIEFHDVHFAYPTRPDVGIFQGFCIKMEAGKSTALVGQSGSGKSTIIGLIERFYDPLRGMVTIDGMDIRRYNLKSLRKHIALVSQEPTLFGGTIRENIAYGKGGKVDESEIIEAARAANAHDFIAGLKEGYETWCGEKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDGQSEKVVQDTLMRVMIGRTSVVVAHRLSTIHSCDVIAVLEKGRVVETGTHSSLLAKGPCGAYYSLVSLQTRHAATPSNTCTKATHSVS* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00285 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 708 989 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00285 1283 FunFam ABC transporter B family member 4 1014 1270 - -
Lapu6g00285 1283 SUPERFAMILY ABC transporter transmembrane region 689 1008 IPR036640 GO:0005524|GO:0016020
Lapu6g00285 1283 Gene3D - 1014 1273 IPR027417 -
Lapu6g00285 1283 ProSitePatterns ABC transporters family signature. 1164 1178 IPR017871 GO:0005524|GO:0016887
Lapu6g00285 1283 Pfam ABC transporter 385 560 IPR003439 GO:0005524
Lapu6g00285 1283 FunFam Putative ABC transporter B family member 8 670 1012 - -
Lapu6g00285 1283 Gene3D - 524 644 IPR027417 -
Lapu6g00285 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 631 IPR027417 -
Lapu6g00285 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1024 1261 IPR003439 GO:0005524
Lapu6g00285 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 629 IPR003439 GO:0005524
Lapu6g00285 1283 ProSitePatterns ABC transporters family signature. 532 546 IPR017871 GO:0005524|GO:0016887
Lapu6g00285 1283 MobiDBLite consensus disorder prediction 636 674 - -
Lapu6g00285 1283 CDD ABC_MTABC3_MDL1_MDL2 1024 1264 - -
Lapu6g00285 1283 CDD ABC_MTABC3_MDL1_MDL2 367 631 - -
Lapu6g00285 1283 Gene3D - 357 499 IPR027417 -
Lapu6g00285 1283 Gene3D ABC transporter type 1, transmembrane domain 645 991 IPR036640 GO:0005524|GO:0016020
Lapu6g00285 1283 MobiDBLite consensus disorder prediction 645 667 - -
Lapu6g00285 1283 FunFam ABC transporter B family member 1 29 364 - -
Lapu6g00285 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1014 1264 IPR027417 -
Lapu6g00285 1283 SUPERFAMILY ABC transporter transmembrane region 36 351 IPR036640 GO:0005524|GO:0016020
Lapu6g00285 1283 SMART AAA_5 1051 1238 IPR003593 GO:0016887
Lapu6g00285 1283 SMART AAA_5 394 606 IPR003593 GO:0016887
Lapu6g00285 1283 PANTHER ABC TRANSPORTER B FAMILY 13 760 IPR039421 -
Lapu6g00285 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00285 1283 Pfam ABC transporter 1047 1192 IPR003439 GO:0005524
Lapu6g00285 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 340 - -
Lapu6g00285 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 692 1007 - -
Lapu6g00285 1283 Pfam ABC transporter transmembrane region 702 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00285 1283 Pfam ABC transporter transmembrane region 42 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00285 1283 Gene3D ABC transporter type 1, transmembrane domain 29 356 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00285 Lapu-Chr6 2562908 2570494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00285 703 1279 Calmodulin-binding Proteins AT2G36910 36.333 1.29e-109 373