Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00267 ATGTACCGGGGTGTTCCTGTTGCTTGCAGGACTCGAAGCAATAAAGGTGTAGTGGTCGGAAGTGGTTTGATAATGAGTCGCAAAAAGAGGAGAATGGTGGATGAAAATGATGATGATGTAATTTACTTGGGAGAAAATTTGGAAGGCCAAGGGGGTGCAAGTGGAAAAGTTGCATCTGTGTGTGGCGCTTCGTGTTCATCACCTGATGCCATGAAGAAGGGTTACGTGTTTTTAGGAGAGGGTGAGGATGATCCTATAGAAGTAGTTGACCTTGAAGGCGGTGAGGGGGCTGAAGTGGGGTTGGGGTGCTGCAAAACAAAGGGTTTTCAGGTTAAGGAGGAAGAGATGGGTGAGGAGGGTGAAGGATGTTCTGTGGCAGCTGATAAAGTTGAGAGCTTTGGTGATGATGAATACGGTTCCAAACCTGAAAAGCCGGTTGTTTTGTTGCGAGATTCAGATGAGGGTGGTAAGAGTGTGGAACTTGGCAGGGATGAACTTAGTAGTGATGGGTATGATTCATTTTGGTCTTCAACAGAAAGTGAGGATGTTGAGACGAGTGATGATGATTTTAATGTTGATGAAGATGATGATGATGATGGAGTTGAGAGTGAATTCTCAAGCAGTGAGGAGAGTGATGATTCTTCTGATGATGAGAGGGGGCGATACAAGATGATTAAGGAGAGGGTAAGAAAGGTGGTGAGTGAATCTGAGAGCAGTAAAATTTGGAGAAGAAAAGGTAAAAAGAAGAAAAAGCATGCAGAGGGGGAGGAGGAAGAGAAATGGAATGGTGCTGATTGTGCTAGTGTGGCATCTAGTAAATCAGAGATTTACAAGGAGGAAACAAAGACGGTAGAAGAGACACATGAAGCGAACAGAGTAGAGAATGTCAATAATACTGATCCTGAAGTCTTTGGTGATCAGTGGCAAACTTCAGTTCCCTCTGTGCCTTTTGAAAATGAGGCAGTAGAGGATAAGGAGAAAGAAGGTAGGGGTCATCAAAGGGTGTTCATTCAAAAAGGGACAGGATATTCAACTGTGATCAAGAAGAGTGAGAAAAATGATAAGGTCAAGACCATTGCTAAAGAAACTGGACATAAAGATGAACTTCATGAAATCCTGAGGATGTCATCCACCACAAAGAACCAATGCTTTGAATTTTTCACTGAATGCTTCAGGGACAAGCTTGATTCTGCTAAAGATGTTTCAAGAGATTTGAAAGAAAAGGGTGATGTTGATCAGGGTCAGACTCGGCCACTAGGTTCTAGGGAGACAATTCCTTTAAACTGGAACTCTATGGTGAAAGAAAAACCAATTGAAAAATCAGAGTCAGAAAAAGAGTTGGATATGTTGTGGGAAGAAATGGAGATGCTACTTCAGGCTGAAAAAATAGGATTCCAGGTTGATAATATAATAAGAACAGATGAAGCAACAGAAAGCGAAGAAAATGAAGCCTCGCGGTGCAAACATGACACTATTTTTGATGAGCAGATTGGGATATACTGCAGATGGTGTGGTTGGATTGCCACTGAAATTAAATATATCACGCCACCATTTATAGATTCTGAGAGAGGTGGCAGAAGGGTGTCGTATGGTGGAGGGAACAGCTCGCGATTTGATGGGGTTCTGTTCACTGAATGTGGTGAAGACTCAGAAGCAGTTAGGTCTCACAACCATGGCACAGTTTGGGACCTTACTCCTGGCATAAAAGAAAGCTTGTTTCCTCACCAACAAGAGGGGTTTGAGTTTATTTGGGCAAATTTGGCAGGAACCACTGATCTTGCCAAGTTGAAGAGGGTTGATCCTCAGAGTGAGGGTGGGTGCATAGTTTCTCATGCTCCTGGAACTGGAAAGACGAGGTTGACCATGGTGTTTTTGCAGACGTATTTGCAAGTGTTTCCCAAGTGTTTACCCATTATCATTGCTCCTGCCAACATATTACTCACCTGGGAAGATGAGCTGAGGAAGTGGAACATAGGAATTCCATTCCACAATTTGAACAACGCTGAATTATCAGGGAAAGAACATGCTATTAGGGAAGTTGATTGGTTATTCCACCAACAGCAGAAGAAGGATGTGATAAGAATGGTGAAGTTGTGTTCTTGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTACAATCTATATGAGAAGCTAGCCGGGGGAAAGTCTGAAGGAGATGGGGAGAAAGATAAGAAAAATAGAAAGATTGGAAAAGAGAAGAAACGTGCGAGAGCTAGGGAGTATGTTGAAACTGCATTGGGAAATGTTCTGCGAGACTATCCTGGTTTATTAGTTCTTGATGAAGGCCACACACCAAGGAACAAGCGTAGCTGTATTTGGAAGGTTCTCTCAGAGAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCTTGAACTCTACAATATTTTGTGCCTAATGAAACCATCTTTTCCTGACAGCATACCACAAGAACTGAAAAAATTTTTGAAAAATAAATTAATACAGGAAACAAAAGCTTCAAAAGATGTGAGTTGGGAACCCATTTCTGCTGGAAATCAAGCTGATGAAAAAATAAACCAGCTGAAGCTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGTCTAAGAGATTGTGTGCTGGTTTTGAAGCCGGAATGCTTGCAGCAAAAGGTTCTGGAGAGCATTGATTCTACTCAAAATGCACTTAATTTTGAGCACAAGTTGGCCTTGGTCTCTGTCCATCCCTCCCTTTTCCTCAACTGCGCTCTGTCAAAGAAAGAAGAATCTGTTGTTGACTCAGAGCAGTTGAAAAAGATTAGATTGGACCCTTATGAAGGGGTCAAAACCAAATTTCTGATTGAGTTAGTCAGACTGTGCGATGCAGTTAATGAGAAAGTCCTTGTGTTCAGCCAGTTCATTGATACCTTATGCTTAATCAAGGACCAGCTCGAGTCAGCCTTCAGTTGGACTGTGGGAACGGACGTGTTGTATATGCATGGCAAGCTTGATCAAAAGCAAAAGCAGTTTCTCATTCATAGTTTCAATGATGCAAATAGTCAGGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTGGTTGGAGCTTCAAGGGTCGTGCTTGTTGATGTAGTTTGGAATCCCTCGGTGGAAAGGCAAGCTATTTGCCGAGCGTATAGACTTGGACAGAAGAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGTGCAAAATATGGTAAACAGTCAGAGAAGGACCGGTTATCTGAACTGGTATTCTCAAGCAGAAGTGTTGAAAATGATAAGCTTGAGAATGTTGGAGTAAAGTTTGAGGATAAAGTTCTTGATCTCATGGTTCAGCATGAAAGTCTGAAGGACATATTTGGTGAATGTCTGGTTCAACCAAAGGACAGAGATTTGGAAACTTTGGGCCCTTAG 3489 0.4228 MYRGVPVACRTRSNKGVVVGSGLIMSRKKRRMVDENDDDVIYLGENLEGQGGASGKVASVCGASCSSPDAMKKGYVFLGEGEDDPIEVVDLEGGEGAEVGLGCCKTKGFQVKEEEMGEEGEGCSVAADKVESFGDDEYGSKPEKPVVLLRDSDEGGKSVELGRDELSSDGYDSFWSSTESEDVETSDDDFNVDEDDDDDGVESEFSSSEESDDSSDDERGRYKMIKERVRKVVSESESSKIWRRKGKKKKKHAEGEEEEKWNGADCASVASSKSEIYKEETKTVEETHEANRVENVNNTDPEVFGDQWQTSVPSVPFENEAVEDKEKEGRGHQRVFIQKGTGYSTVIKKSEKNDKVKTIAKETGHKDELHEILRMSSTTKNQCFEFFTECFRDKLDSAKDVSRDLKEKGDVDQGQTRPLGSRETIPLNWNSMVKEKPIEKSESEKELDMLWEEMEMLLQAEKIGFQVDNIIRTDEATESEENEASRCKHDTIFDEQIGIYCRWCGWIATEIKYITPPFIDSERGGRRVSYGGGNSSRFDGVLFTECGEDSEAVRSHNHGTVWDLTPGIKESLFPHQQEGFEFIWANLAGTTDLAKLKRVDPQSEGGCIVSHAPGTGKTRLTMVFLQTYLQVFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGKEHAIREVDWLFHQQQKKDVIRMVKLCSWYKEKSILLISYNLYEKLAGGKSEGDGEKDKKNRKIGKEKKRARAREYVETALGNVLRDYPGLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFLKNKLIQETKASKDVSWEPISAGNQADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPECLQQKVLESIDSTQNALNFEHKLALVSVHPSLFLNCALSKKEESVVDSEQLKKIRLDPYEGVKTKFLIELVRLCDAVNEKVLVFSQFIDTLCLIKDQLESAFSWTVGTDVLYMHGKLDQKQKQFLIHSFNDANSQAKVLLASIKASSEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYGKQSEKDRLSELVFSSRSVENDKLENVGVKFEDKVLDLMVQHESLKDIFGECLVQPKDRDLETLGP* 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00267 1162 CDD SF2_C_SNF 932 1086 - -
Lapu6g00267 1162 MobiDBLite consensus disorder prediction 721 740 - -
Lapu6g00267 1162 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 108 1156 IPR044567 GO:0080188
Lapu6g00267 1162 MobiDBLite consensus disorder prediction 296 314 - -
Lapu6g00267 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 837 IPR027417 -
Lapu6g00267 1162 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 963 1131 IPR001650 -
Lapu6g00267 1162 MobiDBLite consensus disorder prediction 275 295 - -
Lapu6g00267 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 761 1118 IPR027417 -
Lapu6g00267 1162 MobiDBLite consensus disorder prediction 133 314 - -
Lapu6g00267 1162 Gene3D - 547 866 IPR038718 -
Lapu6g00267 1162 SMART helicmild6 990 1075 IPR001650 -
Lapu6g00267 1162 Pfam Helicase conserved C-terminal domain 960 1075 IPR001650 -
Lapu6g00267 1162 MobiDBLite consensus disorder prediction 133 167 - -
Lapu6g00267 1162 Pfam SNF2-related domain 585 903 IPR000330 GO:0005524|GO:0140658
Lapu6g00267 1162 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 750 816 IPR014001 -
Lapu6g00267 1162 Gene3D - 882 1148 IPR027417 -
Lapu6g00267 1162 MobiDBLite consensus disorder prediction 402 423 - -
Lapu6g00267 1162 MobiDBLite consensus disorder prediction 181 213 - -
Lapu6g00267 1162 SMART ultradead3 568 824 IPR014001 -
Lapu6g00267 1162 MobiDBLite consensus disorder prediction 214 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00267 Lapu-Chr6 2313506 2317796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00267 973 1127 RAD5 or RAD16-like Gene Family AT5G43530 36.129 1.05e-18 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu6g00267 SNF2_N 4.7e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00267 K10875 - gmx:100806733 1319.29