Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00248 ATGGCCCCCAGAGGAACTGGAACGCTGGTTTGGGTGTGTCTGTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAGCTCCACTTGGTAGACAACAGAACCAATCACCCTTCCTCTAGCAGTGACTTCGTCACGACTCAACAGCGCTCCGATACCCTTTTGGGACAGGATTTGGAGGGTGTCACTCACAAGGTGTATTTCGATATAGAGATCCATGGGAAATTAGCGGGTCGCATAGTCATGGGCCTTTTTGGGAACACAGTTCCGAAAACCGTAGAAAACTTTCGAGCGCTTTGTACGGGAGAGAAAGGAAAGGGAAGAAGTGGGGAGTCTCTTCATTATAAAGGGAGCACATTCCATAGGATTATACCAAGCTTTATGGTCCAGGGTGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATACTGGACCAGGATACTTATCTATGGCGAATTCTGGGCAAGACACCAATGGCTCCCAGTTTTTCATAACCACAGTTAAAACCAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTCCTTTCTGGTATGGACGTTCTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCTAAGAACAGGGTCGTCATAATAGACAGTGGAGAATTAACTTCATGA 705 0.4681 MAPRGTGTLVWVCLLWLFFLCATIAFFQLHLVDNRTNHPSSSSDFVTTQQRSDTLLGQDLEGVTHKVYFDIEIHGKLAGRIVMGLFGNTVPKTVENFRALCTGEKGKGRSGESLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKNRVVIIDSGELTS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00248 234 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 66 232 - -
Lapu6g00248 234 SUPERFAMILY Cyclophilin-like 63 232 IPR029000 -
Lapu6g00248 234 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 116 133 IPR020892 GO:0003755|GO:0006457
Lapu6g00248 234 FunFam Peptidyl-prolyl cis-trans isomerase 61 233 - -
Lapu6g00248 234 CDD cyclophilin_ABH_like 65 230 - -
Lapu6g00248 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 191 IPR002130 GO:0000413|GO:0003755
Lapu6g00248 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Lapu6g00248 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 192 207 IPR002130 GO:0000413|GO:0003755
Lapu6g00248 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 164 179 IPR002130 GO:0000413|GO:0003755
Lapu6g00248 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Lapu6g00248 234 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 68 231 IPR002130 GO:0000413|GO:0003755
Lapu6g00248 234 Gene3D - 37 234 IPR029000 -
Lapu6g00248 234 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 69 229 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00248 Lapu-Chr6 2113257 2116358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00248 79 229 U-box Gene Family AT5G67530 43.791 8.54e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00248 K01802 - gmx:100792649 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00248 6 2113257 2116358 Lapu6g00248 6 2113257 2116358 ECH