Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00245 ATGACATCAGCATGGACTCGTCCCCGCTCTCACCCTTCCCCGGCACCGCCAATCTTATTCTCCGACTCAGATTCCGATGCAGACGGCGCATCCTCGGCCGCGGAGACCCACCGCCACTCCGACCTCTCCGACTCCATATTCAAGCCCTACCTCGAATTCTCCGGCCACTCCGGCGCCGACCTCTCGAAGATCCAATCATTCCTAACATCCTCCTCTGCCGGAGCTCTTTCGTGCCTCATCTGCCTCGAACGCATCAAACCCTCCGATCCCACGTGGTCATGCTCCTCCCTCTGCTTTGCTGTCTTCCACCTCATCTGCATCCAGAGCTGGGCCCGACAGGCCTCCGATCTCGCTGCCGCACGCGCTGCCACCCGCCTCCCCATCTCCCCCGCCACAGCCTCCGACACCGCCCTCTGGAACTGTCCCAAATGCAGATCGGAGTACCCCAAATCTCACATTCCCAAAACGTATCTCTGCTTCTGCGGGAAGGTGCAGAACCCTCCCAACGATCCGTGGGTTTTGCCACACTCTTGCGGCGAGGTTTGCGGAAGACCATTGAAGCACAATTGCGGGCACCATTGTTTGTTACTCTGCCATCCCGGGCCGTGCCCCTCTTGCCCCAAACTCGTTAAAGTTCGATGCTTTTGTGGGTGCATTGAAGATGTTCGACGATGTGGATTCAAGGATTTTTCATGTAATAATCGTTGTTCCAAGGTTTTGGATTGTGGGGTTCACCGTTGCACCGAGGTTTGCCACCGTGGCGCTTGCCCTCCTTGCCGGACACGTGGCGTGTATGCATGCCAGTGTGGGAAGGTGAAAGAGGAGAAGGAGTGTTGTGATCGTGTTTTTCAGTGTGATCATCCGTGTAAGAGGAGGCTTAGCTGTGGGAAGCATGTTTGTGAGAGAGGGTGCCATTCTGGTGAGTGTGGTGAGTGTCCCCTTAAGGGAAAGAGAACATGCCCTTGTGGGAAAAGGGTTTATGAAGGAATGCCTTGTGATGCTTCTGTGCAGCTTTGTGGGGCTACCTGTGATAAGATGCTGCCATGTGGCTACCACAGTTGCCCAGAGCGGTGCCACCGTGGACAGTGCGTTGAGACTTGTAGGGTTGTTGTGAAGAAGTCCTGTCGATGTGGGAGCCTCAAGAAAGATAGTAGGTTCCTTGCTATCAAGATTTGGCATGTGAAAGGAAGTGCCAGAGAATGCGTGACTGTGGTCGGCATGCTTGCAAGCGGCGCTGCTGCGATGGGAATTGCCCTCCCTGCTCAGAGATATGCGGAAGGAGGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGTTTGTTTTTGCAGAGGTCCTTGTGCTCCTTGCCCAATAATGGTGACAATTTCATGTGCATGTGGAGAGACACGATTTGAGGTTCCTTGTGGTACCGAAATGGACCAAAAGCCTCCTAGATGTCCCAAACCATGTCCTATCACTCCTTTATGTCGGCATGCATCAAATTGCAAGCCACATAAATGCCATTATGGAGCCTGCCATCCTTGTCGGCTACCGTGTGCCGAAGAGTACCAATGTGGCCACACATGCAAATTAAGGTGTCATGGCGCTAAGCCTCCTCCTAATCCAGAGTTTACTCTGAAACCAAAGAAAAAGAAGATTATACAGCAAAGTGAAGGTGTTCCTGGCACTCCATGCCCTCCTTGTCCAGAACTTGTGTGGAGATCATGTGTTGGGCAACACATTGGAGCTGAGAGAATGATGGTTTGCTCTGATAAATCACAGTTCTCCTGTGAAAATTTATGTGGTAATCCTCTATCATGTGGCAATCATTATTGTACAAAAACCTGCCATGCCTTGGAGAACCAGTTACGAGGAAGCGAACCATGTGAAGATTGTTATCTTCCTTGTCAAAAGGAAAGAGAGCCTGCATGTCAACATAGTTGCCCTCGGCCATGCCATCCTGGAGACTGTCCTCCATGCAAGGTGCTCATCAAACGCTCATGTCATTGTGGCGCAATGGTTCATGTGTTTGAGTGTATATATTACAATAGCTTGTCTGCAAAAGGTCAAGAGGCTGTCCGTTCATGTGGTGGACCATGTCACAGAAAGTTGCCAAATTGTACTCATCTATGCCCCGAGATATGTCATCCTGGTCAATGCACAAATGTTGAGAAATGCTGTAAGAAGGTTATAGTTAGATGCAAATGCCAAACACTGAAAAAGGAGTGGGTTTGTCAAGATGTTCAAGCGGCATATCATCTTATGGGTTGCCATCCAAGGGATACCCCAAAAAATCAATTTGGAATTGGACTAATTCCTTGCAATTCCGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTACGTAAATCCAGGGTTACCGAGGTACAAGAACCAGATCCAGAAAAATCAGTTCGAAAGCGAAGAAAAAGGAGGGAACGGGTTCTTGAATCCAAGGAAACATCAAAACTACAGAAAATTATTTGCGGAGCGAAGCGGTTTCTTCTTTTTGTCTTTATTTTGATCATACTTGTTGCTGCTACGTATTATGGTTACAAGGGACTTTTATGGCTCTCTGATTGGATGAATGAAGTGGATGAACGAAGACAAAGATATTCTCGAATCAAATGA 2628 0.4912 MTSAWTRPRSHPSPAPPILFSDSDSDADGASSAAETHRHSDLSDSIFKPYLEFSGHSGADLSKIQSFLTSSSAGALSCLICLERIKPSDPTWSCSSLCFAVFHLICIQSWARQASDLAAARAATRLPISPATASDTALWNCPKCRSEYPKSHIPKTYLCFCGKVQNPPNDPWVLPHSCGEVCGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCGCIEDVRRCGFKDFSCNNRCSKVLDCGVHRCTEVCHRGACPPCRTRGVYACQCGKVKEEKECCDRVFQCDHPCKRRLSCGKHVCERGCHSGECGECPLKGKRTCPCGKRVYEGMPCDASVQLCGATCDKMLPCGYHSCPERCHRGQCVETCRVVVKKSCRCGSLKKDSRFLAIKIWHVKGSARECVTVVGMLASGAAAMGIALPAQRYAEGGFDVRTINALLHAIVCFCRGPCAPCPIMVTISCACGETRFEVPCGTEMDQKPPRCPKPCPITPLCRHASNCKPHKCHYGACHPCRLPCAEEYQCGHTCKLRCHGAKPPPNPEFTLKPKKKKIIQQSEGVPGTPCPPCPELVWRSCVGQHIGAERMMVCSDKSQFSCENLCGNPLSCGNHYCTKTCHALENQLRGSEPCEDCYLPCQKEREPACQHSCPRPCHPGDCPPCKVLIKRSCHCGAMVHVFECIYYNSLSAKGQEAVRSCGGPCHRKLPNCTHLCPEICHPGQCTNVEKCCKKVIVRCKCQTLKKEWVCQDVQAAYHLMGCHPRDTPKNQFGIGLIPCNSDCKSKVQVVESELQLRKSRVTEVQEPDPEKSVRKRRKRRERVLESKETSKLQKIICGAKRFLLFVFILIILVAATYYGYKGLLWLSDWMNEVDERRQRYSRIK* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00245 875 MobiDBLite consensus disorder prediction 1 37 - -
Lapu6g00245 875 CDD NF-X1-zinc-finger 628 669 - -
Lapu6g00245 875 CDD RING-CH-C4HC3_NFXL1 76 145 - -
Lapu6g00245 875 Pfam NF-X1 type zinc finger 521 530 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 Pfam NF-X1 type zinc finger 190 207 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 Pfam NF-X1 type zinc finger 295 313 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 Pfam NF-X1 type zinc finger 641 657 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 Pfam NF-X1 type zinc finger 349 368 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 Pfam NF-X1 type zinc finger 603 613 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 Pfam NF-X1 type zinc finger 242 260 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 SMART znfxneu3 498 513 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 SMART znfxneu3 703 725 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 SMART znfxneu3 349 369 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 SMART znfxneu3 242 261 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 SMART znfxneu3 295 314 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 SMART znfxneu3 603 630 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 SMART znfxneu3 190 208 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 SMART znfxneu3 521 566 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 SMART znfxneu3 640 658 IPR000967 GO:0005634|GO:0008270
Lapu6g00245 875 CDD NF-X1-zinc-finger 178 226 - -
Lapu6g00245 875 CDD NF-X1-zinc-finger 285 332 - -
Lapu6g00245 875 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 58 530 IPR034078 GO:0003700
Lapu6g00245 875 CDD NF-X1-zinc-finger 232 280 - -
Lapu6g00245 875 SUPERFAMILY RING/U-box 72 150 - -
Lapu6g00245 875 CDD NF-X1-zinc-finger 339 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00245 Lapu-Chr6 2061171 2068985 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lapu6g00245 zf-NF-X1 0.0077 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00245 K15683 - gmx:100799540 1546.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00245 6 2061171 2068985 Lapu6g00245 6 2061171 2068985 ECH