Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00244 ATGAAATATGAAATTGCTGAGGGCATTGACACGGATGCATTAAGTTTTACTTTGGCGGTGGAGAATGAGATAAGGAGCGGGTCTTCGTCAAATTTAGGAGCATCCTCCCCTGTCCCTAGTTTTGCTTCGCTAGTGGACGTTGCCATAAGGAGTAAGACTTCGTCAAATTGGGAAGCATCTTCTCCTTTCTACGGTTTTGATTCTGGACTCGACACTGCCATAAGGAGTAGTAGTAGGACTTCGTCAAATTGGGAAACATCTTCTTTCTACGGTTTTGCTTATGGAGTCGACACTGCACTAAGGAGTGGGTCTCCATCAAATTTGGGAACTTCCCGTGTCCCCAGTTTTGCTTCGGGAGTGGACTATGTGATTAGGAGTAGTAGTGGAGGAACCGATTTAGAAACCTCACCTGTGCATGGTTTTGCTTCCCAAGTTTACTCCACAACTGATGCTGCAGCGTCATCACAAGTCGCGTTGGATGCCACAGGACATGTTGGTGAAGGCTTACAATTATTCAGCCGGGCTGAGCTTGTTGCAGCCACCAACGATTTCTCACTTCACAACAAGATTGGTGTTGGAAGCTTTGGTGTTGTGTACAAAGGCTTACTTGTTGATGGTAGGGAGGTGGCCATCAAAAGGAATGAAACCAGTTCCCGGATGAAGGAGTTCCAAATGATTGTATTTGGGTATTTAGTGACCTTCTTGCGTCGTCTACACCACGAGCACCTGGTAGGGCTAGTAGGGTTCTGTGAAGACAAGGATGAGAAACACTTGGTGTATGAGTACATGAAAAATGGGTCGTTGTATGACCATTTGCATCACAAAGGTAGCTTTGTGTTGAATTCGTGGAAAATGAGGATCAAGATTGCTTTGGAAGCTTCCCGAGGAATAGAATACCTTCATCACTATGCAGGTACAAATATTTACAGGGATATCAAGTCTTCTAACATTCTTCTTGATGATACGTGGACGGCAAGAATATCTGATTTTGGATTGTCGTCGCTGATGAAGGCAGCAGGAACTATCATTGATCCTGAGAACTACGGTGTATATGTGTTGACAACAAACAGTGAAGTGTATGCGTTTGGAGTTGTACTGCTTGAGCTTTTAACGGGAAAGACACCTACTTTGTGTGGTGAAGATGGAGGCACCCCATTAAGTGTGGTGGACTTTGCAGGGCCTCCTATTTTGGCTGGAGATTTGGACAAAATTTTGGATCCAAGGGTTGGAGCACCCCATGTCAATGAAGCAAAGGCAGTGGAGTCAGTGGCCTATACAGCTATCCACTGTGTGAATTTGGAAGGGAAAGATAGACCATCGATTGCTGAAATTGTGGGAAATTTGGAGAGAAAAATATTAATTTACAAGTCCGTCAAAAATTGGGAGGCTCGTGTGAGCATTGTACCTGTTTTCGTTGCCTTTAAATCAGTTCACCTTAATCAGGATTGA 1449 0.4431 MKYEIAEGIDTDALSFTLAVENEIRSGSSSNLGASSPVPSFASLVDVAIRSKTSSNWEASSPFYGFDSGLDTAIRSSSRTSSNWETSSFYGFAYGVDTALRSGSPSNLGTSRVPSFASGVDYVIRSSSGGTDLETSPVHGFASQVYSTTDAAASSQVALDATGHVGEGLQLFSRAELVAATNDFSLHNKIGVGSFGVVYKGLLVDGREVAIKRNETSSRMKEFQMIVFGYLVTFLRRLHHEHLVGLVGFCEDKDEKHLVYEYMKNGSLYDHLHHKGSFVLNSWKMRIKIALEASRGIEYLHHYAGTNIYRDIKSSNILLDDTWTARISDFGLSSLMKAAGTIIDPENYGVYVLTTNSEVYAFGVVLLELLTGKTPTLCGEDGGTPLSVVDFAGPPILAGDLDKILDPRVGAPHVNEAKAVESVAYTAIHCVNLEGKDRPSIAEIVGNLERKILIYKSVKNWEARVSIVPVFVAFKSVHLNQD* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00244 482 SMART serkin_6 184 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00244 482 ProSiteProfiles Protein kinase domain profile. 184 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00244 482 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 140 452 IPR044815 GO:0004674
Lapu6g00244 482 Pfam Protein kinase domain 185 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00244 482 Gene3D Phosphorylase Kinase; domain 1 145 262 - -
Lapu6g00244 482 Gene3D Transferase(Phosphotransferase) domain 1 263 463 - -
Lapu6g00244 482 ProSitePatterns Protein kinases ATP-binding region signature. 190 212 IPR017441 GO:0005524
Lapu6g00244 482 SUPERFAMILY Protein kinase-like (PK-like) 169 448 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00244 Lapu-Chr6 2056169 2057889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00244 172 452 Receptor kinase-like Gene Family AT3G55950 57.556 1.70e-101 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lapu6g00244 Pkinase 5.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00244 - - pvu:PHAVU_001G243500g 420.239