Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00243 ATGAACCTTCTCTCGCATTGTCTCAGGCCTTCTTGGCAACTTCTCAACGCTTGCTACAAAATGAAATGGGTAGTGAAATTGTTGAGCATTAACGTGGATGACACAGATGATGCAGTAAGTTATAGTTGGAGAGTGGACAGTGCGATAAGGAGTGAGACTGCGTCAAATTTGGGAGCATCCCCTTTCCATACTTTTTCTTCGGTGGTGGATTTTGCCATAAGGAGTAGTTGTGCTAGTGATGATGATGCAGATTTTGAAGCATCCCCAGTCCATGGTTTTGCTCCAGCAGTGGACATGAGGACTGTTTCTGCAGGATTATCACGAGTGGTGTCAAGTGGGACACCACATGCTGCTACACGATTATTCACCCTGCCTGAGCTTAAAGCCGCCACCAACAATTTCTCACTTCACAACGTGATTGCCGCTGCAAGCTTTGGTGTTATGTACAGAGGCAAACTCGCGGATGGACGCGAGGTGGCAATCAAGAGGGGTGAAACTGGTTCCAAGATGAAGTTGTTTCAAGAGAAGGAGAGTGCATTTGAGTCTGAATTGGCCTTCTTGTCTCGCCTACGCCACAAGCACTTGGTTGGACTAGTTGGGTTCTGCGAAGAGAAAGATGAGAGGCTCTATGTGTACAAGTACATGAAGAATGGGGCGCTGTATGATCACTTGCATGACAAGAACAATGTGGAGAAGGGTAGCAGTGTGTTGAATTATTGGAAAATGAGGATCAAAATTGCTTTGGATGCAGCCCGGGGAATAGAATATCTTCATAATTACGCAGTTCCATCAATTATCCACAGAGACATCAACTCTTCTAACATTCTTACTGATGCTACTTGGACGGCAAGAGTATCAGATTTTGGATTGTCTGTGATAAGTTCAGAACCTGACCGAGATTACCGACCAATAAAGGCAGCAGGAACCATTGGATACATAGATCCTGAGTACTATGGTTATAATGTATTGACGGCAAAGAGTGATGTGTATGGGCTTGGAGTTGTACTGCTTGAACTTTTAACAGGAAAGAGAGCTATATTCAGGTATGGCGAAGATGGAGGCACTCCATTAAGTGTGGTGGACTTTGCAGTGCCTCCTATTTTGGCTGGAGAATTGGTGGAAATTTTGGATCCAAGGGTCGGAGCACCTGATGTGAATGAGGCGGAGGCAGTGGAGTTAGTGGCCTATACAGCCATCCACTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGGATGACATTGTGGTCAATTTGGAGAGGGCTTTGGCTATTTGTGAGTGGAGCAGTCATAGGCGTACCGCATCCATTCTGCAAACCAAATTTTTACATTTCTCATCTTGGTAA 1347 0.4514 MNLLSHCLRPSWQLLNACYKMKWVVKLLSINVDDTDDAVSYSWRVDSAIRSETASNLGASPFHTFSSVVDFAIRSSCASDDDADFEASPVHGFAPAVDMRTVSAGLSRVVSSGTPHAATRLFTLPELKAATNNFSLHNVIAAASFGVMYRGKLADGREVAIKRGETGSKMKLFQEKESAFESELAFLSRLRHKHLVGLVGFCEEKDERLYVYKYMKNGALYDHLHDKNNVEKGSSVLNYWKMRIKIALDAARGIEYLHNYAVPSIIHRDINSSNILTDATWTARVSDFGLSVISSEPDRDYRPIKAAGTIGYIDPEYYGYNVLTAKSDVYGLGVVLLELLTGKRAIFRYGEDGGTPLSVVDFAVPPILAGELVEILDPRVGAPDVNEAEAVELVAYTAIHCVNLEGKDRPTMDDIVVNLERALAICEWSSHRRTASILQTKFLHFSSW* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00243 448 Gene3D Phosphorylase Kinase; domain 1 100 214 - -
Lapu6g00243 448 ProSiteProfiles Protein kinase domain profile. 134 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00243 448 SUPERFAMILY Protein kinase-like (PK-like) 111 419 IPR011009 -
Lapu6g00243 448 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 110 430 IPR044815 GO:0004674
Lapu6g00243 448 FunFam receptor-like protein kinase FERONIA 99 214 - -
Lapu6g00243 448 Pfam Protein tyrosine and serine/threonine kinase 136 417 IPR001245 GO:0004672|GO:0006468
Lapu6g00243 448 Gene3D Transferase(Phosphotransferase) domain 1 215 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00243 Lapu-Chr6 2054235 2055650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00243 100 426 Receptor kinase-like Gene Family AT3G55950 68.249 9.97e-147 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lapu6g00243 PK_Tyr_Ser-Thr 4.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00243 - - vra:106757659 536.954