Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00242 ATGCGCGTTGTGTCTCTGTATATGAGTATCCCAAGGGAGAATGAATTTCCATTCCACCCTTTTGCGCACTTTCACGTGGCTCATGACACAGATGATGCAACAAGTTTTGGTTGGGTAGTGGACAGTGCCATAAGGAGCGACACTGCGTCAAATTTGGGGGCATCCCCTGCCCATAGTTTTGCTTCGGTAGTGGACTATGCAATGAGAAGTAGTTGTACTTCTGAAGCAGATTTGCGAACATCCCCCGTCCATAGTTTTGCTGTTGTAGAGGACAGTGACACGATGAGGAGTAATAGTGGTAGTGGAGCAGATTTGGAAGCATCTTCTGTGCACGAGTTTGCTTCTTCAGTGGACATCAGGAGTGTTGCAGAGTCAAATATTGGTGCTGGAAGGTTTGGTGTTGCGTACAGAGGCAACCTCGTTGATGGTCGCGAGGTTGCAATCAAGAGGGGTGAAACCTGGCCAAAGACAAAGACCTCAATCAAGTCCGAATTGACCGTCTTGTCCCGTTTACACCACAAGAACTTGGTTGGGTTGGTTGGATTGGTTGGATTCTGTGAAGAGAAACACGAGAGGCTGTTGGCGTATGAGTACATGAAGAATGGTTCCTTGTATGATCATTTGCATGACAAGGGTAGCAGTGCGTTGAATTCGTGGAAAATGAGGATCAAAATTGCTTTGGATGCTTCCCGGGGAGTACAATATGTTCATAACTATGCAGTTCCGTTATTTATTCACAGGGACATTAAGTCTTCCAACATTCTTCTTGATGCCACTTGGATGGCAAGAGTGTCTGATTTTGGACTGTCTTTGATGAGTCCAGAACCTAACTGTGATTACCGACCAATAGAGGCGGCAGGAACAGTTGGATACATTGATCCTGAGTACTATGATCTAAATGTGTTGACAACAAAGAGTTATGTGTATGATCTTGGGGTTGTACTGCTAGAGCTTTTAACAGGAAAGAGACCGATATTCCTTGATGGGGAAGATGGAGGCACCCTACTAAGTGTGCACCGTTTGGTAGACTTTGCAGTGCCCACTATTTTGGGTGGAGAATTGGTGAACATTTTGGATCCCAAGGTTGGACCACCCGATCTGAATGAGGCAGAGGCAGTGGAGTTAGTGGTCCAAACAGCTATCCATTGTGTGAATTTGAAAGGGAATGATAGACCGAGCATGGCTGATACTGTGATCAATTTGGAGAGAGCCTTGGCTATCTCTGACAGTAACCCTCATGATGTACAACTGTACAAGCTATGA 1263 0.4561 MRVVSLYMSIPRENEFPFHPFAHFHVAHDTDDATSFGWVVDSAIRSDTASNLGASPAHSFASVVDYAMRSSCTSEADLRTSPVHSFAVVEDSDTMRSNSGSGADLEASSVHEFASSVDIRSVAESNIGAGRFGVAYRGNLVDGREVAIKRGETWPKTKTSIKSELTVLSRLHHKNLVGLVGLVGFCEEKHERLLAYEYMKNGSLYDHLHDKGSSALNSWKMRIKIALDASRGVQYVHNYAVPLFIHRDIKSSNILLDATWMARVSDFGLSLMSPEPNCDYRPIEAAGTVGYIDPEYYDLNVLTTKSYVYDLGVVLLELLTGKRPIFLDGEDGGTLLSVHRLVDFAVPTILGGELVNILDPKVGPPDLNEAEAVELVVQTAIHCVNLKGNDRPSMADTVINLERALAISDSNPHDVQLYKL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00242 420 Pfam Protein kinase domain 124 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00242 420 ProSitePatterns Protein kinases ATP-binding region signature. 127 149 IPR017441 GO:0005524
Lapu6g00242 420 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 124 410 IPR044815 GO:0004674
Lapu6g00242 420 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00242 420 Gene3D Transferase(Phosphotransferase) domain 1 200 416 - -
Lapu6g00242 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Lapu6g00242 420 Gene3D Phosphorylase Kinase; domain 1 127 199 - -
Lapu6g00242 420 SMART serkin_6 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00242 420 SUPERFAMILY Protein kinase-like (PK-like) 125 399 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00242 Lapu-Chr6 2050319 2051668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00242 106 405 Receptor kinase-like Gene Family AT3G55950 62.579 9.91e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lapu6g00242 Pkinase 1.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00242 - - vun:114193227 496.893