Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00234 ATGAGTAAGCTTCAGAGTGATGCCTTGAGAGAAGCAATCACTGGAATCATGGCCGATTCAAAGGAGAAGAATCGCAAATTTGTCGAGACTATTGAACTCCAGATTGGGCTGAAAAACTATGATCCACAAAAGGATAAGCGTTTCAGCGGCTCTGTCAAGTTGCCCCACATTCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCACAACACGTCGAAGAGGCCGAGAAGATAGGACTGGACTGGATGGACGTGGAGGCCTTGAAGAAGCTAAACAAGAATAAGAAGTTGGTGAAGAAACTAGCTAAAAAATACCATGCCTTTTTAGCTTCTGAAGCAGTTATTAAGCAGATTCCACGTCTGTTGGGTCCTGGTCTGAACAAGGCAGGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTTTGGAGTCAAAAGTAAACGAGTCTAAGGCTATGGTCAAATTTCAACTCAAGAAGGTGCTCTGCATGGGAGTAGCCGTGGGCAATGTCAGTATGGAGGAAAAGCAAATCTTCCAAAATGTTCAACTGAGCGTTAACTTCCTGGTATCCTTGTTGAAAAAGAACTGGCAAAATGTGAGTAGCTCAATCCAATATTTATTAAAACCATTGTCTCTGTTACATTATTTTTTTATTGTTTTTTTTAAATAG 672 0.4152 MSKLQSDALREAITGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSSSIQYLLKPLSLLHYFFIVFFK* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00234 223 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 204 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Lapu6g00234 223 Gene3D - 65 154 IPR016095 -
Lapu6g00234 223 Pfam Ribosomal protein L1p/L10e family 22 202 IPR028364 -
Lapu6g00234 223 SUPERFAMILY Ribosomal protein L1 22 202 IPR023674 -
Lapu6g00234 223 FunFam Ribosomal protein 65 154 - -
Lapu6g00234 223 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Lapu6g00234 223 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 196 - -
Lapu6g00234 223 CDD Ribosomal_L1 9 202 IPR028364 -
Lapu6g00234 223 Gene3D - 21 202 - -
Lapu6g00234 223 FunFam Ribosomal protein 137 208 - -
Lapu6g00234 223 FunFam Ribosomal protein L10a 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00234 Lapu-Chr6 1965986 1969095 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00234 1 200 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 89.500 2.11e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00234 K02865 - gmx:100499715 371.703