Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00230 ATGTCGAACCCAGATACTCGATCATTCAGTTGGCACTACACAGAACTCGATGACAGAGACCTCGAGATCCGAGGAAGGACGTTGTTCTTCGTCATCGTACTCTTCTCCATTATCCTTCTCGTCACGGTTCTCTTCATCTACACGCGTTGGGTTTGCCGTTACCAGGGGCGCCTTCCCACCACAGCGTTTTCCGCCGCCGCCGCCCACGCGCCGCCGCTCCCGTCTTCACAGGGACTGGACCCCGCAATCCTTAAGAAACTGCCCATAATCCTTCACCACGCGCCCTCCGATCGCGACGAAAGAGCGTGGGACGAAACGGAGTGTTGTATCTGCCTCGGCGAGTTCAGAGACGGCGAGAAAGTGAAGGTTTTGCCGGCGTGTGACCATTATTTCCATTGTGAATGTGTTGATAGGTGGCTCACTCTCCACTCAAATTGTCCTCTCTGCAGAGCTTCTCTCAAGGCTGAATTTTCTTTCCCAAAGATTTTGATTCAGGAACCACCCCTTAGAATTGATTTCCAGTTCTAG 528 0.5265 MSNPDTRSFSWHYTELDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRYQGRLPTTAFSAAAAHAPPLPSSQGLDPAILKKLPIILHHAPSDRDERAWDETECCICLGEFRDGEKVKVLPACDHYFHCECVDRWLTLHSNCPLCRASLKAEFSFPKILIQEPPLRIDFQF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00230 175 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Lapu6g00230 175 Pfam Ring finger domain 107 150 IPR001841 -
Lapu6g00230 175 FunFam RING-H2 finger protein ATL66 71 155 - -
Lapu6g00230 175 SUPERFAMILY RING/U-box 98 157 - -
Lapu6g00230 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 27 153 IPR044675 -
Lapu6g00230 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 156 IPR013083 -
Lapu6g00230 175 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00230 Lapu-Chr6 1933683 1934632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00230 11 158 C3H Transcription Factor Family AT3G11110 42.667 5.04e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00230 - - gmx:100803278 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00230 6 1933683 1934632 Lapu6g00230 6 1933683 1934632 PCT