Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00223 ATGAGCAAAAACTGGAAATCCAGCTGCTTCAGGGATCCTCTGTTCCTTCTAGCGTTGTGTTTGTTGTTTCAGAACTTTAGTTGTTGCTCTTTGAACGAAGAAGGTAAAGCTCTTCTGAAGTTCAAGCAGGGAATAGTAAGAGACCCTTTCGGTGCTTTGTCAAATTGGGTTAATGATGAAGTAGCAGTTAACCATTGTAATTGGTTTGGAGTTGAGTGCTCCGATGGAAGAGTGGTGGCCTTGAATTTGAAAGACCTTTGTCTCGAAGGAAATCTTGTACCTGAGCTCGCAAACCTTGTTCACATAAAGTCCATAATTTTGCGGAACAATTCTTTTCATGGAATCATCCCTGACGGAATTGCACACTTGAATGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACATCTACCTACAGATCTTGGGAATAATATTTCACTAACAATCCTTTTGCTGGACAACAATGATCATCTCTGTGGTTTCTCTCCTGAAATTAATAAATTGAAGATGCTTTCTGAATATCAAGTAGATGAAAGCCAACTAAGTATGTCAGAAAAAGTGCCAGTTTGTACAAGAAGATTCATCAAACGGCACATTGGAAAAAATAAGAAAGGTCAAAGGAGGCTGCTGCAATTTCCTCGTCAGGGTGGAAGTCCTTTTAACCGTGCTACTACTTTTCCTGATAGTCCTGCTCCATCTCCTTCAGCTCCCTCACCTGCTCCAGCAACACCACCACCGGTTGAGAGTCCAGCTTCCGCTGATCGAAATGATTCTGCTTCTGCTTCTCCTTCTCCCCTTCCTGAATCTCGCTCTGCACCACCATCTGAAAGTAGCTCATCAAAAAAGAACCTTGTTGGCATTTTGGCTGGAGTTATAGGTGGTGTTGTATTTCTTGTCATTTCAGTCATCGGCATATATCTCTGCAAAACAAACAAGGTAGCTACTGTAAAACCTTGGGCCACAGGATTAAGTGGACAGCTTCAGAAGGCATTCATAACGGGTGTGCCAAAGCTGAAGAGATCAGAGCTTGAAGCAGCATGCGAAGATTTTAGTAATGTAATTGGCACTTCATCCATTGGTACAGTGTACAAAGGGACTTTGTCCAGTGGTGTTGAAATAGCCGTGGCCTCTGTTGCAGTGACATCATCAAAAGATTGGTCAAAGACTTTAGAATCCCAATTTAGGAAGAAGATAGATACGTTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGACGAGCCTTTCACGAGAATGGTGGTTTTTGAGTACGCCCCTAATGGAACACTCTTTGAGCATTTACACATAAAAGAAGCTGAGCACTTGGATTGGGAAACAAGACTTAGAGTTGCCATGGGCATGGCTTACTGCCTACAATATGTGCACCACTTGGAGCCTCCTTTGGTTCTTGGCAACCTGAATTCTTCAGCTGTTCAACTCACTGATGATTGCGCTGCAAAAATCTCTGATTTGAGTTTCTTAACTGAAATAGCTTCAGCTATGATAAAATCTCCTGCTAGAGAACACCCTGACATGACCCCAGAAAGTAACATTTACAGTTTTGGTGTTATATTATTTGAAATGGTGACAGGCAGGCTCCCTTGTTCAGCGGACAATGATGGCTCACTTGATGACTGGGCTTCACAATATTTACATGGGGATCGGCCCCTCAAAGAAATGGTGGATCCAACTCTTGCATCCTTCCAAGAAGAACAGTTGGAAAAAGTTGATGCTTTGATAAAATCTTGTGTCCATCCTGATCAAAAGCAAAGGCCAACTATGAAAGAAGTTTGTGTGAGATTAAGAGAGATAACAAAAATAACACCCGAAGCAGCTGTTCCTAAACTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTGCTTCGGTAAATGGAAACTGA 1926 0.42 MSKNWKSSCFRDPLFLLALCLLFQNFSCCSLNEEGKALLKFKQGIVRDPFGALSNWVNDEVAVNHCNWFGVECSDGRVVALNLKDLCLEGNLVPELANLVHIKSIILRNNSFHGIIPDGIAHLNELEVLDLGYNNFSGHLPTDLGNNISLTILLLDNNDHLCGFSPEINKLKMLSEYQVDESQLSMSEKVPVCTRRFIKRHIGKNKKGQRRLLQFPRQGGSPFNRATTFPDSPAPSPSAPSPAPATPPPVESPASADRNDSASASPSPLPESRSAPPSESSSSKKNLVGILAGVIGGVVFLVISVIGIYLCKTNKVATVKPWATGLSGQLQKAFITGVPKLKRSELEAACEDFSNVIGTSSIGTVYKGTLSSGVEIAVASVAVTSSKDWSKTLESQFRKKIDTLSKVNHKNFVNLLGHCEEDEPFTRMVVFEYAPNGTLFEHLHIKEAEHLDWETRLRVAMGMAYCLQYVHHLEPPLVLGNLNSSAVQLTDDCAAKISDLSFLTEIASAMIKSPAREHPDMTPESNIYSFGVILFEMVTGRLPCSADNDGSLDDWASQYLHGDRPLKEMVDPTLASFQEEQLEKVDALIKSCVHPDQKQRPTMKEVCVRLREITKITPEAAVPKLSPLWWAELEIASVNGN* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00223 641 MobiDBLite consensus disorder prediction 233 251 - -
Lapu6g00223 641 MobiDBLite consensus disorder prediction 204 283 - -
Lapu6g00223 641 Pfam Protein tyrosine and serine/threonine kinase 353 609 IPR001245 GO:0004672|GO:0006468
Lapu6g00223 641 Gene3D Phosphorylase Kinase; domain 1 323 433 - -
Lapu6g00223 641 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Lapu6g00223 641 FunFam Inactive receptor-like serine/threonine-protein kinase 325 433 - -
Lapu6g00223 641 FunFam Nuclear pore complex protein NUP107 31 191 - -
Lapu6g00223 641 PANTHER PROTEIN MALE DISCOVERER 2 13 638 - -
Lapu6g00223 641 Gene3D Ribonuclease Inhibitor 29 212 IPR032675 -
Lapu6g00223 641 SUPERFAMILY Protein kinase-like (PK-like) 334 610 IPR011009 -
Lapu6g00223 641 Gene3D Transferase(Phosphotransferase) domain 1 434 622 - -
Lapu6g00223 641 ProSiteProfiles Protein kinase domain profile. 351 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00223 641 MobiDBLite consensus disorder prediction 256 283 - -
Lapu6g00223 641 SUPERFAMILY L domain-like 31 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00223 Lapu-Chr6 1882799 1887372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00223 15 612 Receptor kinase-like Gene Family AT5G16000 24.561 3.51e-45 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lapu6g00223 PK_Tyr_Ser-Thr 2.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00223 - - gmx:100807163 1011.13