Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00219 ATGCTTTTAAGCTTTTACTCCCAAACCAAACAAGGAAATTTGCAGTTCCCGTTTTCATCCTGTAATCAAATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTGCTGAGACGCAGGTGTACCAAGGACTGCGTCTTTGCTCCTTATTTCCCTTCCAATGACCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGCTGCAGGAAATTCCTATTCAGCAGAGAGCAGATGCTGTGAGTAGTTTGGTGTATGAAGCACATGCAAGAGTTCGGGACCCGGTGTATGGTTGTGTTGGGGCCATATCCTATTTGCAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCAGTGATGCCAAATCCAGAAATGGAAAACCCAAATCAGAAATCTTACCTTCTCCAGAATGAACTCCCTCAATTTCTCAACTATGCTGCCTCTTCTAGCAATGTAATTTATGATGCTGTCACAAGAGAGAGCATTTTTGGACATGACATGGTTTCCTGA 570 0.4421 MLLSFYSQTKQGNLQFPFSSCNQMAGNSPCASCKLLRRRCTKDCVFAPYFPSNDPQKFALVHKVFGASNVSKMLQEIPIQQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVMPNPEMENPNQKSYLLQNELPQFLNYAASSSNVIYDAVTRESIFGHDMVS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00219 189 Coils Coil 108 128 - -
Lapu6g00219 189 ProSiteProfiles LOB domain profile. 28 129 IPR004883 -
Lapu6g00219 189 Pfam Lateral organ boundaries (LOB) domain 29 126 IPR004883 -
Lapu6g00219 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00219 Lapu-Chr6 1847932 1848782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00219 26 140 AS2 family AT2G30130 85.217 8.40e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu6g00219 LOB 3.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00219 - - gmx:121173085 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00219 6 1847932 1848782 Lapu6g00219 6 1847932 1848782 ECH
Lapu6g00219 6 1847932 1848782 Lapu6g00219 6 1847932 1848782 PCT