Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00213 ATGGCTATGGAAAAAGGTCTCTTTTCAGACCTTAGAATAAGGTCAAGGAAAGCCACTTTATCAGATTGTTCCAACTTTTTACGACGTGGGATTGACATTTGTGTTCTCTCAGCCTCTCAAAGTGGTGATACTAATTCAGATGGATTCAGTGCTAATCAGGTGTGGGTTGATGCTAAAATAAATTCTATACAGAGACAACCCCATAATCCAGGGTGCTTATGTCTGTATTATGTAAACTTCTATGTTAATCAAGGTTCACTTGGAAGAGAGATAAGAAGTCTTAGTAAGGAGGTTAAGGTAATTGAAATCAATGAAATTGCAATCCTCCAGAAGCTTGAACGTAATACTTGTGAAGACCAACACTATCGCTGGGAATCATCCCAAGATTGCTCCAAATTATCAGATACTAAATTGATCCTAGGAAAGTTTTTATCTGATCTTTCATGGTTGGTTGTTACATCTGCATTAAAGAAGGTTTCATTTTGCGCAAGATCTTTGGAAAACAAGATTGTGTATCAAATTTTAGGTAGTGATGTCACCAGCTCTTCTTTAAACACGCATTCTCGTGTAAGTGTTGTGCATTTTGAAGTGAACCGCGATGGCTTGTTAAAGCCCATCGTTACCCAAGTTGATGTATCTGACACCAATTCAAGTAGTCATGCACATGATTCCTATTATGATGAAGTGTCACCATCTTATGATGTTCAGGACTTACGACGATCCAAACGTAGGAACATACAACCTGAGCGTTACTTTGATAGTGGTAATGTTTCTGAGATAAAGGTTGGCAATGTTCGAACCTGGCCATACAAGATCAAGGAAAAAGATGATGATAATGATGTGTATTCTTGCAGACAGATTTTAGTGTACAGTAGGAAGGAACAAAAGTCTGCAGAGGCCAATCAAAATGAACATCAAACTCCACTTGCTTGTGTTCCTCTACTTGAAGAGGGAGATTCTTTAGCCCTTGATTATCATACCCTCAGTGACGAGATTACTAATAGTAATGCAAATTACAGCAAGCGTGAGTATAAGAGGAAGAGATTTTTAGATCTAGAAAACGAGGAAGGTTCTGATCCTGGATGGGAAAACTTAAATTCCAATATAAACTCCAAAAAAGAAAATGCTAGAAGAAACTTAAATACAACTGCCTACAAGGAAATGATTGATTCATACTTAAAGGAGGATACTAATGGAACTCCAACAAAAGAAGAACCAAGTGTAATGGACCTGTGGAAGAAAATAAACAACTTGGAGAAGAAGAATGAAACAGAAATACCTCAAAGAGAGGAAGAGGAACAAATCTCTGAGATGGATATGCTGTGGGGAGAAATGGAAATGGCATTGGCATCATGTCATATTGAAGAAGGTTCAAATGCTGTCAATTATGTTGAGAATTCGGAAGAATCTTGTCACACTTGTCAACATGACTACAGATTATATGAAGAAATTGGAATCTATTGCTTCAAATGTGGCTTTGTGAAAACAGAGATAAAATATGTCACGCCACCCTTTATGAAAATGTATTACCGAAGGAGACAACAAGAGGAAAAGAAATGCAGTGAAAAAGAAACTGATAAAGATGATGATTTCGAGCCATCACTAATGGATGCAGAATCCAAAAGAAGAGGGGGTTGTGTCATATCTCATTCTCCTGGATCGGGTAAAACTTTTCTTATCATTGCATTTCTCATTAGCTATTTAAAGCTATTTCCAGGGATGAAACCTCTTGTCCTTGCTCCAACAACCACTCTTCACACTTGGCACAAAGAATTCGTCAAATGGAATATTTCTATGCCAGTGTATCTGATTCATGGATGTGGTGGACCTCAGAAAGATGATATGCAAAATTTAATTGGTCTTCCTAGTTTTTCAAAAACAAATGAAGGTGTCAAACATATTTTGAACTGCTTGGACAAGATAAAAAAGTGGCAAGCACACCCAGGTGTTTTGGTCATGAGTTATTCCTCATTCTTGGCATTAACGAGAGAGGAATCAGAGTTTACACCAAGAAAGTATATGGCTAAAACATTGAGGGAAGGACCTGGGATCCTGATACTCGATGAAGGTCACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAAGTGTTGATGAAAGTGAAAACAGATATAAGAATACTACTTTCTGGTACATTATTTCAGAATAACTTCTGTGAATATTTTAACACACTTTGCTTGGCAAGACCAAAGTTTATTTACGAAGTGCTGAATGAGTTAGACCCAAATGACAGAAGGAAAAGAAAAACGGAAGAGAAGACACGCCATTTGCTAGAGTCTCAAGCTAGAAAATTGTTCTTAGACAACATTGCTAAGAAAATTGACTCAAGTAATGGAAATGAGAGGATGCAAGGTCTAAACATGTTGAGAGAAATCACAAATGATTTCATAGATATTTATGAGAGCGCAAATTTTGACAGTGTTCCTGGCTTGCAAATGTATACCTTGTTAATGAATACAACAGACATACAGAGTGAAATTTTGCAACAACTGCACACAAGAATGGGTGAGTGCACGGGGTACCCTCTGGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCATGGTTGGTTAAAACAGCCTCATATGCAGAGAAGTTTATCACTTTGGACCAGCTACAGCAGCTAGAGAAATGCAAGTTTGATTTGAAAGCAGGGTCGAAAGTTAAATTTGTTATGAGCCTTGTTGTCCGTGTTATGCAGAAGGAAAAAGTGCTTATATTCTGCCACAATCATGCACCTGTGAAGTTTTTGGTAGGGTTATTTGAAATGGTCTTTAAATGGGAAAAGGATAGAGAAATTTTGTTGCTTAATGGGGAACAAGACCTCTTTGAACGTGGGAAAGTGATAGATAAGTTTGAAGAGCGTAGAGGAGCATCAAAGGTGCTCCTTGCTTCAATTACGGCTTGTGGTGAAGGTATTAGTTTGACATCAGCTTCTAGAGTGATTTTTCTGGACTCAGAGTGGAATCCATCGAAGACAAAGCAGGCTATTGCAAGGGCCTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTATCAGCTCTTGACAACAGGTACATTAGAGGAAGATAAACACAGAAGAACCACTTGGAAAGAGTGGGTCTCTGACATGATTTTCAGTGAGACCTTCGAGGAGAACACTTCCCGTTCGCAAGCAGAAAAGATTGAAGATGATATACTGAGGGAAATGGTTGAGGAGGACAAGTCCAAATCAATTCATATGATACTCAAGAATGAAAAGGCTTCCACTAACTAA 3279 0.3818 MAMEKGLFSDLRIRSRKATLSDCSNFLRRGIDICVLSASQSGDTNSDGFSANQVWVDAKINSIQRQPHNPGCLCLYYVNFYVNQGSLGREIRSLSKEVKVIEINEIAILQKLERNTCEDQHYRWESSQDCSKLSDTKLILGKFLSDLSWLVVTSALKKVSFCARSLENKIVYQILGSDVTSSSLNTHSRVSVVHFEVNRDGLLKPIVTQVDVSDTNSSSHAHDSYYDEVSPSYDVQDLRRSKRRNIQPERYFDSGNVSEIKVGNVRTWPYKIKEKDDDNDVYSCRQILVYSRKEQKSAEANQNEHQTPLACVPLLEEGDSLALDYHTLSDEITNSNANYSKREYKRKRFLDLENEEGSDPGWENLNSNINSKKENARRNLNTTAYKEMIDSYLKEDTNGTPTKEEPSVMDLWKKINNLEKKNETEIPQREEEEQISEMDMLWGEMEMALASCHIEEGSNAVNYVENSEESCHTCQHDYRLYEEIGIYCFKCGFVKTEIKYVTPPFMKMYYRRRQQEEKKCSEKETDKDDDFEPSLMDAESKRRGGCVISHSPGSGKTFLIIAFLISYLKLFPGMKPLVLAPTTTLHTWHKEFVKWNISMPVYLIHGCGGPQKDDMQNLIGLPSFSKTNEGVKHILNCLDKIKKWQAHPGVLVMSYSSFLALTREESEFTPRKYMAKTLREGPGILILDEGHNPRSTKSRLRKVLMKVKTDIRILLSGTLFQNNFCEYFNTLCLARPKFIYEVLNELDPNDRRKRKTEEKTRHLLESQARKLFLDNIAKKIDSSNGNERMQGLNMLREITNDFIDIYESANFDSVPGLQMYTLLMNTTDIQSEILQQLHTRMGECTGYPLELELLITLGSIHPWLVKTASYAEKFITLDQLQQLEKCKFDLKAGSKVKFVMSLVVRVMQKEKVLIFCHNHAPVKFLVGLFEMVFKWEKDREILLLNGEQDLFERGKVIDKFEERRGASKVLLASITACGEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGTLEEDKHRRTTWKEWVSDMIFSETFEENTSRSQAEKIEDDILREMVEEDKSKSIHMILKNEKASTN* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00213 1092 Gene3D - 531 779 IPR038718 -
Lapu6g00213 1092 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 898 1068 IPR001650 -
Lapu6g00213 1092 Pfam SNF2-related domain 541 780 IPR000330 GO:0005524|GO:0140658
Lapu6g00213 1092 CDD SF2_C_SNF 887 1023 - -
Lapu6g00213 1092 Gene3D - 817 1092 IPR027417 -
Lapu6g00213 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 682 1054 IPR027417 -
Lapu6g00213 1092 SMART ultradead3 520 755 IPR014001 -
Lapu6g00213 1092 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 537 1091 IPR044567 GO:0080188
Lapu6g00213 1092 SMART helicmild6 923 1012 IPR001650 -
Lapu6g00213 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 744 IPR027417 -
Lapu6g00213 1092 Pfam Helicase conserved C-terminal domain 895 1011 IPR001650 -
Lapu6g00213 1092 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 537 737 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00213 Lapu-Chr6 1779700 1783869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00213 940 1030 RAD5 or RAD16-like Gene Family AT5G43530 38.462 9.69e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu6g00213 SNF2_N 9.3e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00213 K10875 - gmx:100781856 1511.89