Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00208 ATGGTAGTGGAGAAAATCAGCCTTAACCCTTGTCAGTTTTCACATCATGAAGTGAGAAACCCAGACCATGTTTTTGATAAGAAGAAAGAAAGATGGAAGAAGACTCCTTCCAAGACGCAAATCAACCCGTGTTGTTTTTTGTTTTTCTTCTGGGTGTGGACTCTTGTTCTCTCCACATGTTTGGAACCAGTTTTGTGTGAAGATGAGGGTTGGGATGGAGTGGTTGTGACAGCATCAAACTTCTTAGCACTTCAAGCGTTCAAGCAAGAGTTGGTTGATCCTGAAGGCTTCTTGCGGAGCTGGAATGATAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGTATCAAGTGTGCTAAGGGAGAGGTTATTGTAATCCAGCTTCCGTGGAAGGGATTGAGGGGGCGTATCACTGATAAGATTGGCCAGCTTCAAGGTCTTAGGAAGCTAAGTCTTCATGATAATCAAATTGGTGGTTCAATCCCTTCAACTTTTGGACTTCTTCCTAACCTTAGAGGGGTTCAGTTATTCAACAATAGGCTAACAGGTTCCATCCCTCCTTCCTTAGGTTACTGCCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTGCTCACAGGAGCAATTCCTTATAGTCTTGCCAATTCCACCAGGCTTTATTGGCTTAACTTGAGTTTTAACTCCTTTTCTGGTCCTTTACCAGCTAGCCTAACTCGTTCACTTTCCCTCACATTCCTTTCTCTTCAACATAACAATCTCTCTGGTTCCCTTCCTAACTCTTGGGGTGGGAGTCCCAAGGACGACTTCTTTAGGCTTCAAAATTTGATCCTACATCATAACTTTTTCACTGGAAACGTTCCTTCTTCTTTGGGTAACTTAAGAGAACTCAATGAGATTTCCCTTAGTAATAATAAGTTTAGTGGAGCTATACCCAATGAAATAGGAACCCTTTCTAGGCTTAAGATACTAGACATTTCTAATAATGCCTTGAATGGGAGCTTGCCTGCTACCCTCTCTAATTTATCGTCGCTTAAACTGCTGAATGCAGAGAACAACCTCCTTGAAAATCAAATCCCTGAAACTTTAGGGAGTTTACGCAATCTTTCTGTTCTAATTTTGAGTAGAAACCAACTTAGTGGGCATATTCCTTCAAGTATTGCAAACATTTCCACTCTTATGCAGCTTGATTTGTCACTGAATAATCTAAGTGGAGAAATTCCAGTCTCCTTTGACACTCAACGTAGTCTCAATCTCTTCAATGTTTCTTATAATAGCCTCCTAGGTGCCGTTCCCCCTCTACTTGCCAGGAAATTCAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGATACAGCCCCTCAACACCATGTCCTTCACAAGCTCCATCAGAAGGAGTCATTGCCCCACCTCATGAAATGTCAAAACACCACCATAATAGGAAGCTAAGTACCAAAGACACTATTCTAATAGTAGCAGGGGTTCTTCTCATAGTCCTGATCACACTTTGTTGCATCCTTCTCTTCTGTCTGATCAGAAAGAGATCAACGTCAAAGACCAAGAATGGCAGAGGTGCAGGGAGAACTGGCACTACGAGGACAGAAAAAGGAATCCCTCCTGTTGCTGCTGGTGATGTTGAAGCAGGTGGTGAGGCTGGAGGGAAACTAGTCCATTTTGATGGACCAATAGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTATATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGGGAAAAGATCGCTAAAGGTCAGAGAGAATTTGAATCAGAAGTCAGTGTTCTAGGAAAAATTAGACACCCCAATGTTTTGGCTCTGAGGGCCTATTACTTAGGACCCAAAGGGGAGAAGCTTCTGGTTTTCGATTACATGCCTAAAGGAAGTGTTGCTTCTTTCCTACATGGTAGTGGAACTGAAACATCCATTGATTGGCAAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGTTTGTTTTACCTCCATTCCCAGGAGAACATTATTCATGGGAACCTCACATCCAGCAATGTATTGCTTGATGAGAATACAAATGCTAAAATTGCAGATTTTGGTCTTTCTAGGCTGATGACAACTGCTGCTAACTCCAATGTAATAGCTACTGCAGAGGCATTGGGATACCGGGCACCTGAGCTCTCAAAGTTCAAGAAAGCCAACTCCAAAACTGATATCTATAGTCTTGGTGTTATCTTGTTAGAACTCCTAACGAGGAAGTCACCTGGAGTGTCTATGAATGGAGTAGATTTACCTCAGTGGGTTGCCTCTACTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATACGGACTTAATGAGAGATGGTTCAACAGTTGGCGATGAGTTGCTAAACACATTGAAGCTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTACATCAAGTGCTTCAGCAACTGGAAGAGATTAGACCAGAGAGATCAGTCACAGCCAGTCCTGGGGATGATTCTCTAATATAG 2580 0.4287 MVVEKISLNPCQFSHHEVRNPDHVFDKKKERWKKTPSKTQINPCCFLFFFWVWTLVLSTCLEPVLCEDEGWDGVVVTASNFLALQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAKGEVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNQIGGSIPSTFGLLPNLRGVQLFNNRLTGSIPPSLGYCPLLQSLDLSNNLLTGAIPYSLANSTRLYWLNLSFNSFSGPLPASLTRSLSLTFLSLQHNNLSGSLPNSWGGSPKDDFFRLQNLILHHNFFTGNVPSSLGNLRELNEISLSNNKFSGAIPNEIGTLSRLKILDISNNALNGSLPATLSNLSSLKLLNAENNLLENQIPETLGSLRNLSVLILSRNQLSGHIPSSIANISTLMQLDLSLNNLSGEIPVSFDTQRSLNLFNVSYNSLLGAVPPLLARKFNSSSFVGNIQLCGYSPSTPCPSQAPSEGVIAPPHEMSKHHHNRKLSTKDTILIVAGVLLIVLITLCCILLFCLIRKRSTSKTKNGRGAGRTGTTRTEKGIPPVAAGDVEAGGEAGGKLVHFDGPIAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKIAKGQREFESEVSVLGKIRHPNVLALRAYYLGPKGEKLLVFDYMPKGSVASFLHGSGTETSIDWQTRMKIAQDMARGLFYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAEALGYRAPELSKFKKANSKTDIYSLGVILLELLTRKSPGVSMNGVDLPQWVASTVKEEWTNEVFDTDLMRDGSTVGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRPERSVTASPGDDSLI* 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00208 859 Pfam Protein tyrosine and serine/threonine kinase 575 840 IPR001245 GO:0004672|GO:0006468
Lapu6g00208 859 SMART LRR_typ_2 365 388 IPR003591 -
Lapu6g00208 859 SMART LRR_typ_2 144 167 IPR003591 -
Lapu6g00208 859 SMART LRR_typ_2 168 192 IPR003591 -
Lapu6g00208 859 SMART LRR_typ_2 242 263 IPR003591 -
Lapu6g00208 859 SMART LRR_typ_2 317 340 IPR003591 -
Lapu6g00208 859 FunFam Pollen receptor-like kinase 1 649 853 - -
Lapu6g00208 859 CDD STKc_IRAK 578 843 - -
Lapu6g00208 859 Pfam Leucine rich repeat N-terminal domain 82 118 IPR013210 -
Lapu6g00208 859 MobiDBLite consensus disorder prediction 519 540 - -
Lapu6g00208 859 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 271 843 - -
Lapu6g00208 859 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 77 267 - -
Lapu6g00208 859 Gene3D Transferase(Phosphotransferase) domain 1 650 855 - -
Lapu6g00208 859 SUPERFAMILY Protein kinase-like (PK-like) 576 845 IPR011009 -
Lapu6g00208 859 SUPERFAMILY L domain-like 118 450 - -
Lapu6g00208 859 FunFam Leucine-rich repeat receptor-like protein kinase 557 648 - -
Lapu6g00208 859 Gene3D Ribonuclease Inhibitor 79 236 IPR032675 -
Lapu6g00208 859 Gene3D Ribonuclease Inhibitor 334 459 IPR032675 -
Lapu6g00208 859 Gene3D Ribonuclease Inhibitor 237 333 IPR032675 -
Lapu6g00208 859 ProSiteProfiles Protein kinase domain profile. 572 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00208 859 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 268 462 - -
Lapu6g00208 859 Gene3D Phosphorylase Kinase; domain 1 578 649 - -
Lapu6g00208 859 PRINTS Leucine-rich repeat signature 195 208 - -
Lapu6g00208 859 PRINTS Leucine-rich repeat signature 317 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00208 Lapu-Chr6 1746967 1750218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00208 71 845 Receptor kinase-like Gene Family AT3G51740 63.346 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lapu6g00208 PK_Tyr_Ser-Thr 3.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00208 - - pvu:PHAVU_001G246800g 1470.68