Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00196 ATGGTTTCTAGAGAGCAGAAGAGAGCAGCACTGCATGAGAAGCTGCAAATTCTTCGTTCTGTTACTAACTCTCATGCTCTAAACAAAACCTCGATCATAACAGATGCGTCAAAGTATATCCAAGAGTTAAAGCAAAAGGTGGAAAAATTGAATCAAGAAGTAGCCAATGCACAAACTTCAACTGACCAAAATACTTTGCCTATGGTTACAGTAGAAACGACGGAAAAGGGTTTTCTTATTAATGTTTTTTCAGCAAAGAGTTGCCCTGGTCTGTTCGTTTCCATATTGGAGTTATTTGAAGAGATGAGTCTTAATGTGCTTGAAGCTAGGGCTACCTGTACGGACACGTTTCGATTTCATGCTGTTGGAGGAAAAAATGAAGAACAAGGCGAGAATATTGATGCAAGAGCTGTGAAACAGGCAATGAGACAAGCAATAAAGAACTGGAGCCAAAATGCTGACCAAAAGTAA 471 0.3949 MVSREQKRAALHEKLQILRSVTNSHALNKTSIITDASKYIQELKQKVEKLNQEVANAQTSTDQNTLPMVTVETTEKGFLINVFSAKSCPGLFVSILELFEEMSLNVLEARATCTDTFRFHAVGGKNEEQGENIDARAVKQAMRQAIKNWSQNADQK* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00196 156 Gene3D - 3 66 IPR036638 GO:0046983
Lapu6g00196 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Lapu6g00196 156 Coils Coil 33 60 - -
Lapu6g00196 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 66 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00196 Lapu-Chr6 1662260 1664161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00196 1 95 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 27.200 6.47e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00196 - - gmx:100814138 265.388